These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

70 related articles for article (PubMed ID: 18180239)

  • 21. AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments.
    Shafee T; Cooke I
    BMC Bioinformatics; 2016 Oct; 17(1):434. PubMed ID: 27784265
    [TBL] [Abstract][Full Text] [Related]  

  • 22. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
    Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
    [TBL] [Abstract][Full Text] [Related]  

  • 23. From analysis of protein structural alignments toward a novel approach to align protein sequences.
    Sunyaev SR; Bogopolsky GA; Oleynikova NV; Vlasov PK; Finkelstein AV; Roytberg MA
    Proteins; 2004 Feb; 54(3):569-82. PubMed ID: 14748004
    [TBL] [Abstract][Full Text] [Related]  

  • 24. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Model-based prediction of sequence alignment quality.
    Ahola V; Aittokallio T; Vihinen M; Uusipaikka E
    Bioinformatics; 2008 Oct; 24(19):2165-71. PubMed ID: 18678587
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Quality estimation of multiple sequence alignments by Bayesian hypothesis testing.
    Tomovic A; Oakeley EJ
    Bioinformatics; 2007 Sep; 23(18):2488-90. PubMed ID: 17660204
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The iRMSD: a local measure of sequence alignment accuracy using structural information.
    Armougom F; Moretti S; Keduas V; Notredame C
    Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments.
    Vacic V; Iakoucheva LM; Radivojac P
    Bioinformatics; 2006 Jun; 22(12):1536-7. PubMed ID: 16632492
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.
    Canaran P; Stein L; Ware D
    Bioinformatics; 2006 Apr; 22(7):885-6. PubMed ID: 16473875
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Vorolign--fast structural alignment using Voronoi contacts.
    Birzele F; Gewehr JE; Csaba G; Zimmer R
    Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Reconfigurable systems for sequence alignment and for general dynamic programming.
    Jacobi RP; Ayala-Rincón M; Carvalho LG; Llanos CH; Hartenstein RW
    Genet Mol Res; 2005 Sep; 4(3):543-52. PubMed ID: 16342039
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Statistics of local multiple alignments.
    Prakash A; Tompa M
    Bioinformatics; 2005 Jun; 21 Suppl 1():i344-50. PubMed ID: 15961477
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Branch and bound computation of exact p-values.
    Bejerano G
    Bioinformatics; 2006 Sep; 22(17):2158-9. PubMed ID: 16895926
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Genome-wide synteny through highly sensitive sequence alignment: Satsuma.
    Grabherr MG; Russell P; Meyer M; Mauceli E; Alföldi J; Di Palma F; Lindblad-Toh K
    Bioinformatics; 2010 May; 26(9):1145-51. PubMed ID: 20208069
    [TBL] [Abstract][Full Text] [Related]  

  • 35. AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
    Kumar S; Skjaeveland A; Orr RJ; Enger P; Ruden T; Mevik BH; Burki F; Botnen A; Shalchian-Tabrizi K
    BMC Bioinformatics; 2009 Oct; 10():357. PubMed ID: 19863793
    [TBL] [Abstract][Full Text] [Related]  

  • 36. The efficient computation of position-specific match scores with the fast fourier transform.
    Rajasekaran S; Jin X; Spouge JL
    J Comput Biol; 2002; 9(1):23-33. PubMed ID: 11911793
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The SMAL web server: global multiple network alignment from pairwise alignments.
    Dohrmann J; Singh R
    Bioinformatics; 2016 Nov; 32(21):3330-3332. PubMed ID: 27378297
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI.
    González-Domínguez J
    Methods Mol Biol; 2021; 2231():39-47. PubMed ID: 33289885
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SpEED: fast computation of sensitive spaced seeds.
    Ilie L; Ilie S; Bigvand AM
    Bioinformatics; 2011 Sep; 27(17):2433-4. PubMed ID: 21690104
    [TBL] [Abstract][Full Text] [Related]  

  • 40. YAHA: fast and flexible long-read alignment with optimal breakpoint detection.
    Faust GG; Hall IM
    Bioinformatics; 2012 Oct; 28(19):2417-24. PubMed ID: 22829624
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 4.