These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1082 related articles for article (PubMed ID: 18194517)

  • 1. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons.
    Ellinghaus D; Kurtz S; Willhoeft U
    BMC Bioinformatics; 2008 Jan; 9():18. PubMed ID: 18194517
    [TBL] [Abstract][Full Text] [Related]  

  • 2. De novo identification of LTR retrotransposons in eukaryotic genomes.
    Rho M; Choi JH; Kim S; Lynch M; Tang H
    BMC Genomics; 2007 Apr; 8():90. PubMed ID: 17407597
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient algorithms and software for detection of full-length LTR retrotransposons.
    Kalyanaraman A; Aluru S
    J Bioinform Comput Biol; 2006 Apr; 4(2):197-216. PubMed ID: 16819780
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient algorithms and software for detection of full-length LTR retrotransposons.
    Kalyanaraman A; Aluru S
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():56-64. PubMed ID: 16447962
    [TBL] [Abstract][Full Text] [Related]  

  • 5. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons.
    Xu Z; Wang H
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W265-8. PubMed ID: 17485477
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fine-grained annotation and classification of de novo predicted LTR retrotransposons.
    Steinbiss S; Willhoeft U; Gremme G; Kurtz S
    Nucleic Acids Res; 2009 Nov; 37(21):7002-13. PubMed ID: 19786494
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LTR_STRUC: a novel search and identification program for LTR retrotransposons.
    McCarthy EM; McDonald JF
    Bioinformatics; 2003 Feb; 19(3):362-7. PubMed ID: 12584121
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DARTS: An Algorithm for Domain-Associated Retrotransposon Search in Genome Assemblies.
    Biryukov M; Ustyantsev K
    Genes (Basel); 2021 Dec; 13(1):. PubMed ID: 35052350
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences.
    Darzentas N; Bousios A; Apostolidou V; Tsaftaris AS
    Bioinformatics; 2010 Oct; 26(19):2452-4. PubMed ID: 20696734
    [TBL] [Abstract][Full Text] [Related]  

  • 10. LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.
    Valencia JD; Girgis HZ
    BMC Genomics; 2019 Jun; 20(1):450. PubMed ID: 31159720
    [TBL] [Abstract][Full Text] [Related]  

  • 11. [Identification and analysis methods of plant LTR retrotransposon sequences].
    Hou XG; Zhang X; Guo DL
    Yi Chuan; 2012 Nov; 34(11):1491-500. PubMed ID: 23208147
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons.
    Mourier T; Willerslev E
    BMC Genomics; 2010 Mar; 11():167. PubMed ID: 20226011
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.
    Staton SE; Bakken BH; Blackman BK; Chapman MA; Kane NC; Tang S; Ungerer MC; Knapp SJ; Rieseberg LH; Burke JM
    Plant J; 2012 Oct; 72(1):142-53. PubMed ID: 22691070
    [TBL] [Abstract][Full Text] [Related]  

  • 14. LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons.
    Steinbiss S; Kastens S; Kurtz S
    Mob DNA; 2012 Nov; 3(1):18. PubMed ID: 23131050
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-wide analysis of LTR-retrotransposons in oil palm.
    Beulé T; Agbessi MD; Dussert S; Jaligot E; Guyot R
    BMC Genomics; 2015 Oct; 16():795. PubMed ID: 26470789
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences.
    Gao L; McCarthy EM; Ganko EW; McDonald JF
    BMC Genomics; 2004 Mar; 5(1):18. PubMed ID: 15040813
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome.
    Maisonhaute C; Ogereau D; Hua-Van A; Capy P
    Gene; 2007 May; 393(1-2):116-26. PubMed ID: 17382490
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats.
    Garza AB; Lerat E; Girgis HZ
    Mob DNA; 2024 Apr; 15(1):8. PubMed ID: 38627766
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Simulation-based estimation of branching models for LTR retrotransposons.
    Moulin S; Seux N; Chrétien S; Guyeux C; Lerat E
    Bioinformatics; 2017 Feb; 33(3):320-326. PubMed ID: 28011770
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DIRS-1 and the other tyrosine recombinase retrotransposons.
    Poulter RT; Goodwin TJ
    Cytogenet Genome Res; 2005; 110(1-4):575-88. PubMed ID: 16093711
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 55.