These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 18205620)

  • 1. Effect of co-evolving amino acid residues on topology of phylogenetic trees.
    Sherbakov DY; Triboy TI
    Biochemistry (Mosc); 2007 Dec; 72(12):1363-7. PubMed ID: 18205620
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".
    Tripet B; Wagschal K; Lavigne P; Mant CT; Hodges RS
    J Mol Biol; 2000 Jul; 300(2):377-402. PubMed ID: 10873472
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences.
    Fukami-Kobayashi K; Schreiber DR; Benner SA
    J Mol Biol; 2002 Jun; 319(3):729-43. PubMed ID: 12054866
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Detecting Amino Acid Coevolution with Bayesian Graphical Models.
    Avino M; Poon AFY
    Methods Mol Biol; 2019; 1851():105-122. PubMed ID: 30298394
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels.
    Fleishman SJ; Yifrach O; Ben-Tal N
    J Mol Biol; 2004 Jul; 340(2):307-18. PubMed ID: 15201054
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation.
    Seoighe C; Johnston CR; Shields DC
    Mol Biol Evol; 2003 Apr; 20(4):484-90. PubMed ID: 12654935
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Extensive parallelism in protein evolution.
    Bazykin GA; Kondrashov FA; Brudno M; Poliakov A; Dubchak I; Kondrashov AS
    Biol Direct; 2007 Aug; 2():20. PubMed ID: 17705846
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Influence of substitution model selection on protein phylogenetic tree reconstruction.
    Del Amparo R; Arenas M
    Gene; 2023 May; 865():147336. PubMed ID: 36871672
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenetic Analyses of Chemokine Receptors from Sequence Retrieval to Phylogenetic Trees.
    Santos JC
    Methods Mol Biol; 2020; 2108():313-343. PubMed ID: 31939192
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Episodic evolution of coadapted sets of amino acid sites in mitochondrial proteins.
    Neverov AD; Popova AV; Fedonin GG; Cheremukhin EA; Klink GV; Bazykin GA
    PLoS Genet; 2021 Jan; 17(1):e1008711. PubMed ID: 33493156
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exploring a phylogenetic approach for the detection of correlated substitutions in proteins.
    Tuff P; Darlu P
    Mol Biol Evol; 2000 Nov; 17(11):1753-9. PubMed ID: 11070062
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Parallel Evolution of Metazoan Mitochondrial Proteins.
    Klink GV; Bazykin GA
    Genome Biol Evol; 2017 May; 9(5):1341-1350. PubMed ID: 28595327
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree.
    Dib L; Meyer X; Artimo P; Ioannidis V; Stockinger H; Salamin N
    BMC Bioinformatics; 2015 Nov; 16():394. PubMed ID: 26597459
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Correlated Selection on Amino Acid Deletion and Replacement in Mammalian Protein Sequences.
    Zheng Y; Graur D; Azevedo RBR
    J Mol Evol; 2018 Jul; 86(6):365-378. PubMed ID: 29955898
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny.
    Russo CA; Takezaki N; Nei M
    Mol Biol Evol; 1996 Mar; 13(3):525-36. PubMed ID: 8742641
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A method for detecting positive selection at single amino acid sites.
    Suzuki Y; Gojobori T
    Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein map: an alignment-free sequence comparison method based on various properties of amino acids.
    Yu C; Cheng SY; He RL; Yau SS
    Gene; 2011 Oct; 486(1-2):110-8. PubMed ID: 21803133
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.
    Pupko T; Bell RE; Mayrose I; Glaser F; Ben-Tal N
    Bioinformatics; 2002; 18 Suppl 1():S71-7. PubMed ID: 12169533
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.