These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
55 related articles for article (PubMed ID: 18229708)
1. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor. Pan W; Wei P; Khodursky A Pac Symp Biocomput; 2008; ():465-76. PubMed ID: 18229708 [TBL] [Abstract][Full Text] [Related]
2. Double locking of an Escherichia coli promoter by two repressors prevents premature colicin expression and cell lysis. Butala M; Sonjak S; Kamenšek S; Hodošček M; Browning DF; Žgur-Bertok D; Busby SJ Mol Microbiol; 2012 Oct; 86(1):129-39. PubMed ID: 22812562 [TBL] [Abstract][Full Text] [Related]
3. The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator. Kohl TA; Baumbach J; Jungwirth B; Pühler A; Tauch A J Biotechnol; 2008 Jul; 135(4):340-50. PubMed ID: 18573287 [TBL] [Abstract][Full Text] [Related]
4. Conservation of the LexA repressor binding site in Deinococcus radiodurans. Khan F; Singh SP; Mishra BN J Integr Bioinform; 2008 Jan; 5(1):. PubMed ID: 20134056 [TBL] [Abstract][Full Text] [Related]
5. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Kwon HJ; Bennik MH; Demple B; Ellenberger T Nat Struct Biol; 2000 May; 7(5):424-30. PubMed ID: 10802742 [TBL] [Abstract][Full Text] [Related]
6. A yeast transcription assay defines distinct rel and dorsal DNA recognition sequences. Kamens J; Brent R New Biol; 1991 Oct; 3(10):1005-13. PubMed ID: 1768648 [TBL] [Abstract][Full Text] [Related]
7. Structure-function relationship of the Lrp-binding region upstream of lysU in Escherichia coli. Gazeau M; Delort F; Fromant M; Dessen P; Blanquet S; Plateau P J Mol Biol; 1994 Aug; 241(3):378-89. PubMed ID: 8064854 [TBL] [Abstract][Full Text] [Related]
8. Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli. Lewis LK; Harlow GR; Gregg-Jolly LA; Mount DW J Mol Biol; 1994 Aug; 241(4):507-23. PubMed ID: 8057377 [TBL] [Abstract][Full Text] [Related]
9. Physical constraints and functional characteristics of transcription factor-DNA interaction. Gerland U; Moroz JD; Hwa T Proc Natl Acad Sci U S A; 2002 Sep; 99(19):12015-20. PubMed ID: 12218191 [TBL] [Abstract][Full Text] [Related]
10. Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation. Rippe K; Mücke N; Schulz A J Mol Biol; 1998 May; 278(5):915-33. PubMed ID: 9600853 [TBL] [Abstract][Full Text] [Related]
11. An equilibrium partitioning model connecting gene expression and cis-motif content. Mellor J; DeLisi C Bioinformatics; 2006 Jul; 22(14):e368-74. PubMed ID: 16873495 [TBL] [Abstract][Full Text] [Related]
12. Reconstruction of novel transcription factor regulons through inference of their binding sites. Elmas A; Wang X; Samoilov MS BMC Bioinformatics; 2015 Sep; 16():299. PubMed ID: 26388177 [TBL] [Abstract][Full Text] [Related]
13. BSS-HMM3s: an improved HMM method for identifying transcription factor binding sites. Xu D; Liu HJ; Wang YF DNA Seq; 2005 Dec; 16(6):403-11. PubMed ID: 16287619 [TBL] [Abstract][Full Text] [Related]
14. In vitro analysis of a constitutively active mutant form of the Escherichia coli global transcription factor FNR. Ziegelhoffer EC; Kiley PJ J Mol Biol; 1995 Jan; 245(4):351-61. PubMed ID: 7837268 [TBL] [Abstract][Full Text] [Related]
15. Lrp, a global regulatory protein of Escherichia coli, binds co-operatively to multiple sites and activates transcription of ilvIH. Wang Q; Calvo JM J Mol Biol; 1993 Jan; 229(2):306-18. PubMed ID: 8429549 [TBL] [Abstract][Full Text] [Related]
16. ZIFIBI: Prediction of DNA binding sites for zinc finger proteins. Cho SY; Chung M; Park M; Park S; Lee YS Biochem Biophys Res Commun; 2008 May; 369(3):845-8. PubMed ID: 18325330 [TBL] [Abstract][Full Text] [Related]
18. LexA, a transcription regulator binding in the promoter region of the bidirectional hydrogenase in the cyanobacterium Synechocystis sp. PCC 6803. Oliveira P; Lindblad P FEMS Microbiol Lett; 2005 Oct; 251(1):59-66. PubMed ID: 16102913 [TBL] [Abstract][Full Text] [Related]
19. Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on sigma s and requires activation by cAMP-CRP. Marschall C; Labrousse V; Kreimer M; Weichart D; Kolb A; Hengge-Aronis R J Mol Biol; 1998 Feb; 276(2):339-53. PubMed ID: 9512707 [TBL] [Abstract][Full Text] [Related]