122 related articles for article (PubMed ID: 18233417)
1. Discrete breathers in nonlinear network models of proteins.
Juanico B; Sanejouand YH; Piazza F; De Los Rios P
Phys Rev Lett; 2007 Dec; 99(23):238104. PubMed ID: 18233417
[TBL] [Abstract][Full Text] [Related]
2. Discrete breathers in protein structures.
Piazza F; Sanejouand YH
Phys Biol; 2008 May; 5(2):026001. PubMed ID: 18451466
[TBL] [Abstract][Full Text] [Related]
3. Discrete breathers in a realistic coarse-grained model of proteins.
Luccioli S; Imparato A; Lepri S; Piazza F; Torcini A
Phys Biol; 2011 Aug; 8(4):046008. PubMed ID: 21670494
[TBL] [Abstract][Full Text] [Related]
4. Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding.
Haliloglu T; Erman B
Phys Rev Lett; 2009 Feb; 102(8):088103. PubMed ID: 19257794
[TBL] [Abstract][Full Text] [Related]
5. Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation.
Roccatano D; Mark AE; Hayward S
J Mol Biol; 2001 Jul; 310(5):1039-53. PubMed ID: 11501994
[TBL] [Abstract][Full Text] [Related]
6. Protein promiscuity: drug resistance and native functions--HIV-1 case.
Fernández A; Tawfik DS; Berkhout B; Sanders R; Kloczkowski A; Sen T; Jernigan B
J Biomol Struct Dyn; 2005 Jun; 22(6):615-24. PubMed ID: 15842167
[TBL] [Abstract][Full Text] [Related]
7. Dynamical properties of discrete breathers in curved chains with first and second neighbor interactions.
Ibañes M; Sancho JM; Tsironis GP
Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Apr; 65(4 Pt 1):041902. PubMed ID: 12005868
[TBL] [Abstract][Full Text] [Related]
8. Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model.
Wang W; Kollman PA
J Mol Biol; 2000 Nov; 303(4):567-82. PubMed ID: 11054292
[TBL] [Abstract][Full Text] [Related]
9. A semiempirical free energy force field with charge-based desolvation.
Huey R; Morris GM; Olson AJ; Goodsell DS
J Comput Chem; 2007 Apr; 28(6):1145-52. PubMed ID: 17274016
[TBL] [Abstract][Full Text] [Related]
10. Prediction of the binding energy for small molecules, peptides and proteins.
Schapira M; Totrov M; Abagyan R
J Mol Recognit; 1999; 12(3):177-90. PubMed ID: 10398408
[TBL] [Abstract][Full Text] [Related]
11. Autoprocessing of HIV-1 protease is tightly coupled to protein folding.
Louis JM; Clore GM; Gronenborn AM
Nat Struct Biol; 1999 Sep; 6(9):868-75. PubMed ID: 10467100
[TBL] [Abstract][Full Text] [Related]
12. If "discrete breathers" is the answer, what is the question?
Tsironis GP
Chaos; 2003 Jun; 13(2):657-66. PubMed ID: 12777130
[TBL] [Abstract][Full Text] [Related]
13. Citrate synthase proteins in extremophilic organisms: studies within a structure-based model.
Różycki B; Cieplak M
J Chem Phys; 2014 Dec; 141(23):235102. PubMed ID: 25527961
[TBL] [Abstract][Full Text] [Related]
14. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.
Miyashita O; Onuchic JN; Wolynes PG
Proc Natl Acad Sci U S A; 2003 Oct; 100(22):12570-5. PubMed ID: 14566052
[TBL] [Abstract][Full Text] [Related]
15. Illustration of HIV-1 protease folding through a molten-globule-like intermediate using an experimental model that implicates alpha-crystallin and calcium ions.
Dash C; Sastry M; Rao M
Biochemistry; 2005 Mar; 44(10):3725-34. PubMed ID: 15751949
[TBL] [Abstract][Full Text] [Related]
16. Role of conformational fluctuations in the enzymatic reaction of HIV-1 protease.
Piana S; Carloni P; Parrinello M
J Mol Biol; 2002 May; 319(2):567-83. PubMed ID: 12051929
[TBL] [Abstract][Full Text] [Related]
17. Active site mutants of pig citrate synthase: effects of mutations on the enzyme catalytic and structural properties.
Evans CT; Kurz LC; Remington SJ; Srere PA
Biochemistry; 1996 Aug; 35(33):10661-72. PubMed ID: 8718855
[TBL] [Abstract][Full Text] [Related]
18. Long-range energy transfer in proteins.
Piazza F; Sanejouand YH
Phys Biol; 2009 Nov; 6(4):046014. PubMed ID: 19910672
[TBL] [Abstract][Full Text] [Related]
19. Empirical free energy calculations of human immunodeficiency virus type 1 protease crystallographic complexes. II. Knowledge-based ligand-protein interaction potentials applied to thermodynamic analysis of hydrophobic mutations.
Verkhivker GM
Pac Symp Biocomput; 1996; ():638-52. PubMed ID: 9390264
[TBL] [Abstract][Full Text] [Related]
20. The mechanism of citryl-coenzyme A formation catalyzed by citrate synthase.
Aleksandrov A; Zvereva E; Field M
J Phys Chem B; 2014 May; 118(17):4505-13. PubMed ID: 24720842
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]