92 related articles for article (PubMed ID: 18240575)
1. [Correlation of codon biases and potential secondary structures with mRNA translation efficiency in unicellular organisms].
Vladimirov NV; Likhoshvaĭ VA; Matushkin IuG
Mol Biol (Mosk); 2007; 41(5):926-33. PubMed ID: 18240575
[TBL] [Abstract][Full Text] [Related]
2. Differentiation of single-cell organisms according to elongation stages crucial for gene expression efficacy.
Likhoshvai VA; Matushkin YG
FEBS Lett; 2002 Apr; 516(1-3):87-92. PubMed ID: 11959109
[TBL] [Abstract][Full Text] [Related]
3. Translation efficiency in yeasts correlates with nucleosome formation in promoters.
Matushkin YG; Levitsky VG; Orlov YL; Likhoshvai VA; Kolchanov NA
J Biomol Struct Dyn; 2013; 31(1):96-102. PubMed ID: 22803765
[TBL] [Abstract][Full Text] [Related]
4. Gene functionality's influence on the second codon: A large-scale survey of second codon composition in three domains.
Tang SL; Chang BC; Halgamuge SK
Genomics; 2010 Aug; 96(2):92-101. PubMed ID: 20417269
[TBL] [Abstract][Full Text] [Related]
5. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
6. The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.
Bonetti B; Fu L; Moon J; Bedwell DM
J Mol Biol; 1995 Aug; 251(3):334-45. PubMed ID: 7650736
[TBL] [Abstract][Full Text] [Related]
7. Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding.
Yu CH; Dang Y; Zhou Z; Wu C; Zhao F; Sachs MS; Liu Y
Mol Cell; 2015 Sep; 59(5):744-54. PubMed ID: 26321254
[TBL] [Abstract][Full Text] [Related]
8. Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells.
Zhao F; Yu CH; Liu Y
Nucleic Acids Res; 2017 Aug; 45(14):8484-8492. PubMed ID: 28582582
[TBL] [Abstract][Full Text] [Related]
9. Effect of leader primary structure on the translational efficiency of phosphoglycerate kinase mRNA in yeast.
van den Heuvel JJ; Planta RJ; Raué HA
Yeast; 1990; 6(6):473-82. PubMed ID: 2080664
[TBL] [Abstract][Full Text] [Related]
10. Eukaryote-specific motif of ribosomal protein S15 neighbors A site codon during elongation and termination of translation.
Khairulina J; Graifer D; Bulygin K; Ven'yaminova A; Frolova L; Karpova G
Biochimie; 2010 Jul; 92(7):820-5. PubMed ID: 20206660
[TBL] [Abstract][Full Text] [Related]
11. Codon bias signatures, organization of microorganisms in codon space, and lifestyle.
Carbone A; Képès F; Zinovyev A
Mol Biol Evol; 2005 Mar; 22(3):547-61. PubMed ID: 15537809
[TBL] [Abstract][Full Text] [Related]
12. Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.
Hatfield GW; Roth DA
Biotechnol Annu Rev; 2007; 13():27-42. PubMed ID: 17875472
[TBL] [Abstract][Full Text] [Related]
13. Codon usage-mediated inhibition of HIV-1 gag expression in mammalian cells occurs independently of translation.
Kofman A; Graf M; Deml L; Wolf H; Wagner R
Tsitologiia; 2003; 45(1):94-100. PubMed ID: 12683242
[TBL] [Abstract][Full Text] [Related]
14. A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency.
Merkl R
J Mol Evol; 2003 Oct; 57(4):453-66. PubMed ID: 14708578
[TBL] [Abstract][Full Text] [Related]
15. Universal pattern and diverse strengths of successive synonymous codon bias in three domains of life, particularly among prokaryotic genomes.
Guo FB; Ye YN; Zhao HL; Lin D; Wei W
DNA Res; 2012 Dec; 19(6):477-85. PubMed ID: 23132389
[TBL] [Abstract][Full Text] [Related]
16. A role for tRNA modifications in genome structure and codon usage.
Novoa EM; Pavon-Eternod M; Pan T; Ribas de Pouplana L
Cell; 2012 Mar; 149(1):202-13. PubMed ID: 22464330
[TBL] [Abstract][Full Text] [Related]
17. Influence of the codon following the initiation codon on the expression of the lacZ gene in Saccharomyces cerevisiae.
Looman AC; Laude M; Stahl U
Yeast; 1991 Feb; 7(2):157-65. PubMed ID: 1905858
[TBL] [Abstract][Full Text] [Related]
18. Universally increased mRNA stability downstream of the translation initiation site in eukaryotes and prokaryotes.
Mao Y; Wang W; Cheng N; Li Q; Tao S
Gene; 2013 Apr; 517(2):230-5. PubMed ID: 23313297
[TBL] [Abstract][Full Text] [Related]
19. Weak 5'-mRNA secondary structures in short eukaryotic genes.
Ding Y; Shah P; Plotkin JB
Genome Biol Evol; 2012; 4(10):1046-53. PubMed ID: 23034215
[TBL] [Abstract][Full Text] [Related]
20. Organisms can essentially be classified according to two codon patterns.
Okayasu T; Sorimachi K
Amino Acids; 2009 Feb; 36(2):261-71. PubMed ID: 18379857
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]