These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

6526 related articles for article (PubMed ID: 18261238)

  • 1. The RAST Server: rapid annotations using subsystems technology.
    Aziz RK; Bartels D; Best AA; DeJongh M; Disz T; Edwards RA; Formsma K; Gerdes S; Glass EM; Kubal M; Meyer F; Olsen GJ; Olson R; Osterman AL; Overbeek RA; McNeil LK; Paarmann D; Paczian T; Parrello B; Pusch GD; Reich C; Stevens R; Vassieva O; Vonstein V; Wilke A; Zagnitko O
    BMC Genomics; 2008 Feb; 9():75. PubMed ID: 18261238
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
    Overbeek R; Olson R; Pusch GD; Olsen GJ; Davis JJ; Disz T; Edwards RA; Gerdes S; Parrello B; Shukla M; Vonstein V; Wattam AR; Xia F; Stevens R
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D206-14. PubMed ID: 24293654
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
    Bocs S; Danchin A; Médigue C
    BMC Bioinformatics; 2002; 3():5. PubMed ID: 11879526
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.
    Aziz RK; Devoid S; Disz T; Edwards RA; Henry CS; Olsen GJ; Olson R; Overbeek R; Parrello B; Pusch GD; Stevens RL; Vonstein V; Xia F
    PLoS One; 2012; 7(10):e48053. PubMed ID: 23110173
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.
    Overbeek R; Begley T; Butler RM; Choudhuri JV; Chuang HY; Cohoon M; de Crécy-Lagard V; Diaz N; Disz T; Edwards R; Fonstein M; Frank ED; Gerdes S; Glass EM; Goesmann A; Hanson A; Iwata-Reuyl D; Jensen R; Jamshidi N; Krause L; Kubal M; Larsen N; Linke B; McHardy AC; Meyer F; Neuweger H; Olsen G; Olson R; Osterman A; Portnoy V; Pusch GD; Rodionov DA; Rückert C; Steiner J; Stevens R; Thiele I; Vassieva O; Ye Y; Zagnitko O; Vonstein V
    Nucleic Acids Res; 2005; 33(17):5691-702. PubMed ID: 16214803
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AlterORF: a database of alternate open reading frames.
    Pedroso I; Rivera G; Lazo F; Chacón M; Ossandón F; Veloso FA; Holmes DS
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D517-8. PubMed ID: 18096612
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GeneViTo: visualizing gene-product functional and structural features in genomic datasets.
    Vernikos GS; Gkogkas CG; Promponas VJ; Hamodrakas SJ
    BMC Bioinformatics; 2003 Oct; 4():53. PubMed ID: 14594459
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.
    Romualdi A; Siddiqui R; Glöckner G; Lehmann R; Sühnel J
    Bioinformatics; 2005 Sep; 21(18):3669-71. PubMed ID: 16076887
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.
    Tcherepanov V; Ehlers A; Upton C
    BMC Genomics; 2006 Jun; 7():150. PubMed ID: 16772042
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.
    Seaver SM; Gerdes S; Frelin O; Lerma-Ortiz C; Bradbury LM; Zallot R; Hasnain G; Niehaus TD; El Yacoubi B; Pasternak S; Olson R; Pusch G; Overbeek R; Stevens R; de Crécy-Lagard V; Ware D; Hanson AD; Henry CS
    Proc Natl Acad Sci U S A; 2014 Jul; 111(26):9645-50. PubMed ID: 24927599
    [TBL] [Abstract][Full Text] [Related]  

  • 11. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
    Mende DR; Letunic I; Maistrenko OM; Schmidt TSB; Milanese A; Paoli L; Hernández-Plaza A; Orakov AN; Forslund SK; Sunagawa S; Zeller G; Huerta-Cepas J; Coelho LP; Bork P
    Nucleic Acids Res; 2020 Jan; 48(D1):D621-D625. PubMed ID: 31647096
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
    Lagesen K; Hallin P; Rødland EA; Staerfeldt HH; Rognes T; Ussery DW
    Nucleic Acids Res; 2007; 35(9):3100-8. PubMed ID: 17452365
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accessing the SEED genome databases via Web services API: tools for programmers.
    Disz T; Akhter S; Cuevas D; Olson R; Overbeek R; Vonstein V; Stevens R; Edwards RA
    BMC Bioinformatics; 2010 Jun; 11():319. PubMed ID: 20546611
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
    Luo Y; Fu C; Zhang DY; Lin K
    BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Taboada B; Estrada K; Ciria R; Merino E
    Bioinformatics; 2018 Dec; 34(23):4118-4120. PubMed ID: 29931111
    [TBL] [Abstract][Full Text] [Related]  

  • 18. [Comprehensive re-annotation of protein-coding genes for prokaryotic genomes by Z-curve and similarity-based methods].
    Liu S; Zeng Z; Zeng FC; Du MZ
    Yi Chuan; 2020 Jul; 42(7):691-702. PubMed ID: 32694108
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrative method for identifying the over-annotated protein-coding genes in microbial genomes.
    Yu JF; Xiao K; Jiang DK; Guo J; Wang JH; Sun X
    DNA Res; 2011 Dec; 18(6):435-49. PubMed ID: 21903723
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 327.