429 related articles for article (PubMed ID: 18270964)
1. Coarse-grained force field for the nucleosome from self-consistent multiscaling.
Voltz K; Trylska J; Tozzini V; Kurkal-Siebert V; Langowski J; Smith J
J Comput Chem; 2008 Jul; 29(9):1429-39. PubMed ID: 18270964
[TBL] [Abstract][Full Text] [Related]
2. Modeling real dynamics in the coarse-grained representation of condensed phase systems.
Izvekov S; Voth GA
J Chem Phys; 2006 Oct; 125(15):151101. PubMed ID: 17059230
[TBL] [Abstract][Full Text] [Related]
3. Modeling diffusive dynamics in adaptive resolution simulation of liquid water.
Matysiak S; Clementi C; Praprotnik M; Kremer K; Delle Site L
J Chem Phys; 2008 Jan; 128(2):024503. PubMed ID: 18205455
[TBL] [Abstract][Full Text] [Related]
4. Comparison of explicit atom, united atom, and coarse-grained simulations of poly(methyl methacrylate).
Chen C; Depa P; Maranas JK; Garcia Sakai V
J Chem Phys; 2008 Mar; 128(12):124906. PubMed ID: 18376972
[TBL] [Abstract][Full Text] [Related]
5. Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel.
Shi Q; Izvekov S; Voth GA
J Phys Chem B; 2006 Aug; 110(31):15045-8. PubMed ID: 16884212
[TBL] [Abstract][Full Text] [Related]
6. Ab initio protein structure prediction with force field parameters derived from water-phase quantum chemical calculation.
Katagiri D; Fuji H; Neya S; Hoshino T
J Comput Chem; 2008 Sep; 29(12):1930-44. PubMed ID: 18366016
[TBL] [Abstract][Full Text] [Related]
7. Coarse-grained force field for simulating polymer-tethered silsesquioxane self-assembly in solution.
Chan ER; Striolo A; McCabe C; Cummings PT; Glotzer SC
J Chem Phys; 2007 Sep; 127(11):114102. PubMed ID: 17887823
[TBL] [Abstract][Full Text] [Related]
8. Self-assembling dipeptides: conformational sampling in solvent-free coarse-grained simulation.
Villa A; Peter C; van der Vegt NF
Phys Chem Chem Phys; 2009 Mar; 11(12):2077-86. PubMed ID: 19280018
[TBL] [Abstract][Full Text] [Related]
9. Systematic coarse-graining of nanoparticle interactions in molecular dynamics simulation.
Izvekov S; Violi A; Voth GA
J Phys Chem B; 2005 Sep; 109(36):17019-24. PubMed ID: 16853168
[TBL] [Abstract][Full Text] [Related]
10. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
Betancourt MR
J Phys Chem B; 2009 Nov; 113(44):14824-30. PubMed ID: 19817469
[TBL] [Abstract][Full Text] [Related]
11. Effective force coarse-graining.
Wang Y; Noid WG; Liu P; Voth GA
Phys Chem Chem Phys; 2009 Mar; 11(12):2002-15. PubMed ID: 19280011
[TBL] [Abstract][Full Text] [Related]
12. Multiscale coarse-grained simulations of ionic liquids: comparison of three approaches to derive effective potentials.
Wang YL; Lyubartsev A; Lu ZY; Laaksonen A
Phys Chem Chem Phys; 2013 May; 15(20):7701-12. PubMed ID: 23595102
[TBL] [Abstract][Full Text] [Related]
13. Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks.
Cieplak M; Thompson D
J Chem Phys; 2008 Jun; 128(23):234906. PubMed ID: 18570527
[TBL] [Abstract][Full Text] [Related]
14. Molecular dynamics simulations of polyglutamine aggregation using solvent-free multiscale coarse-grained models.
Wang Y; Voth GA
J Phys Chem B; 2010 Jul; 114(26):8735-43. PubMed ID: 20550147
[TBL] [Abstract][Full Text] [Related]
15. Coarse-grained models for proteins.
Tozzini V
Curr Opin Struct Biol; 2005 Apr; 15(2):144-50. PubMed ID: 15837171
[TBL] [Abstract][Full Text] [Related]
16. A coarse-grained protein-protein potential derived from an all-atom force field.
Basdevant N; Borgis D; Ha-Duong T
J Phys Chem B; 2007 Aug; 111(31):9390-9. PubMed ID: 17616119
[TBL] [Abstract][Full Text] [Related]
17. Cation-induced polyelectrolyte-polyelectrolyte attraction in solutions of DNA and nucleosome core particles.
Korolev N; Lyubartsev AP; Nordenskiöld L
Adv Colloid Interface Sci; 2010 Jul; 158(1-2):32-47. PubMed ID: 19758583
[TBL] [Abstract][Full Text] [Related]
18. The multiscale coarse-graining method. III. A test of pairwise additivity of the coarse-grained potential and of new basis functions for the variational calculation.
Das A; Andersen HC
J Chem Phys; 2009 Jul; 131(3):034102. PubMed ID: 19624176
[TBL] [Abstract][Full Text] [Related]
19. Pairwise energies for polypeptide coarse-grained models derived from atomic force fields.
Betancourt MR; Omovie SJ
J Chem Phys; 2009 May; 130(19):195103. PubMed ID: 19466867
[TBL] [Abstract][Full Text] [Related]
20. Mesoscale model of polymer melt structure: self-consistent mapping of molecular correlations to coarse-grained potentials.
Ashbaugh HS; Patel HA; Kumar SK; Garde S
J Chem Phys; 2005 Mar; 122(10):104908. PubMed ID: 15836359
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
