225 related articles for article (PubMed ID: 18319723)
1. Formulating genome-scale kinetic models in the post-genome era.
Jamshidi N; Palsson BØ
Mol Syst Biol; 2008; 4():171. PubMed ID: 18319723
[TBL] [Abstract][Full Text] [Related]
2. Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism.
Fleming RM; Thiele I; Provan G; Nasheuer HP
J Theor Biol; 2010 Jun; 264(3):683-92. PubMed ID: 20230840
[TBL] [Abstract][Full Text] [Related]
3. MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.
Haiman ZB; Zielinski DC; Koike Y; Yurkovich JT; Palsson BO
PLoS Comput Biol; 2021 Jan; 17(1):e1008208. PubMed ID: 33507922
[TBL] [Abstract][Full Text] [Related]
4. Flux-concentration duality in dynamic nonequilibrium biological networks.
Jamshidi N; Palsson BØ
Biophys J; 2009 Sep; 97(5):L11-3. PubMed ID: 19720010
[TBL] [Abstract][Full Text] [Related]
5. From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks.
Soh KC; Miskovic L; Hatzimanikatis V
FEMS Yeast Res; 2012 Mar; 12(2):129-43. PubMed ID: 22129227
[TBL] [Abstract][Full Text] [Related]
6. Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints.
Chakrabarti A; Miskovic L; Soh KC; Hatzimanikatis V
Biotechnol J; 2013 Sep; 8(9):1043-57. PubMed ID: 23868566
[TBL] [Abstract][Full Text] [Related]
7. Top-down analysis of temporal hierarchy in biochemical reaction networks.
Jamshidi N; Palsson BØ
PLoS Comput Biol; 2008 Sep; 4(9):e1000177. PubMed ID: 18787685
[TBL] [Abstract][Full Text] [Related]
8. Flux balance analysis of biological systems: applications and challenges.
Raman K; Chandra N
Brief Bioinform; 2009 Jul; 10(4):435-49. PubMed ID: 19287049
[TBL] [Abstract][Full Text] [Related]
9. In silico analysis of SNPs and other high-throughput data.
Jamshidi N; Vo TD; Palsson BO
Methods Mol Biol; 2007; 366():267-85. PubMed ID: 17568130
[TBL] [Abstract][Full Text] [Related]
10. A data-driven approach for timescale decomposition of biochemical reaction networks.
Akbari A; Haiman ZB; Palsson BO
mSystems; 2024 Feb; 9(2):e0100123. PubMed ID: 38259168
[TBL] [Abstract][Full Text] [Related]
11. Comparing methods for metabolic network analysis and an application to metabolic engineering.
Tomar N; De RK
Gene; 2013 May; 521(1):1-14. PubMed ID: 23537990
[TBL] [Abstract][Full Text] [Related]
12. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.
Feist AM; Henry CS; Reed JL; Krummenacker M; Joyce AR; Karp PD; Broadbelt LJ; Hatzimanikatis V; Palsson BØ
Mol Syst Biol; 2007; 3():121. PubMed ID: 17593909
[TBL] [Abstract][Full Text] [Related]
13. Flux balance analysis: interrogating genome-scale metabolic networks.
Oberhardt MA; Chavali AK; Papin JA
Methods Mol Biol; 2009; 500():61-80. PubMed ID: 19399432
[TBL] [Abstract][Full Text] [Related]
14. The application of flux balance analysis in systems biology.
Gianchandani EP; Chavali AK; Papin JA
Wiley Interdiscip Rev Syst Biol Med; 2010; 2(3):372-382. PubMed ID: 20836035
[TBL] [Abstract][Full Text] [Related]
15. Computing chemical organizations in biological networks.
Centler F; Kaleta C; di Fenizio PS; Dittrich P
Bioinformatics; 2008 Jul; 24(14):1611-8. PubMed ID: 18480100
[TBL] [Abstract][Full Text] [Related]
16. Global reconstruction of the human metabolic network based on genomic and bibliomic data.
Duarte NC; Becker SA; Jamshidi N; Thiele I; Mo ML; Vo TD; Srivas R; Palsson BØ
Proc Natl Acad Sci U S A; 2007 Feb; 104(6):1777-82. PubMed ID: 17267599
[TBL] [Abstract][Full Text] [Related]
17. A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation.
Cruz F; Faria JP; Rocha M; Rocha I; Dias O
Biochem Soc Trans; 2020 Oct; 48(5):1889-1903. PubMed ID: 32940659
[TBL] [Abstract][Full Text] [Related]
18. A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.
Nogales J; Palsson BØ; Thiele I
BMC Syst Biol; 2008 Sep; 2():79. PubMed ID: 18793442
[TBL] [Abstract][Full Text] [Related]
19. Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells.
Selivanov VA; Meshalkina LE; Solovjeva ON; Kuchel PW; Ramos-Montoya A; Kochetov GA; Lee PW; Cascante M
Bioinformatics; 2005 Sep; 21(17):3558-64. PubMed ID: 16002431
[TBL] [Abstract][Full Text] [Related]
20. From annotated genomes to metabolic flux models and kinetic parameter fitting.
Segrè D; Zucker J; Katz J; Lin X; D'haeseleer P; Rindone WP; Kharchenko P; Nguyen DH; Wright MA; Church GM
OMICS; 2003; 7(3):301-16. PubMed ID: 14583118
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]