BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 18320038)

  • 1. A visual data mining tool that facilitates reconstruction of transcription regulatory networks.
    Jupiter DC; VanBuren V
    PLoS One; 2008 Mar; 3(3):e1717. PubMed ID: 18320038
    [TBL] [Abstract][Full Text] [Related]  

  • 2. STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
    Jupiter D; Chen H; VanBuren V
    BMC Bioinformatics; 2009 Oct; 10():332. PubMed ID: 19828039
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identifying significant genetic regulatory networks in the prostate cancer from microarray data based on transcription factor analysis and conditional independency.
    Yeh HY; Cheng SW; Lin YC; Yeh CY; Lin SF; Soo VW
    BMC Med Genomics; 2009 Dec; 2():70. PubMed ID: 20025723
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Visual data mining of coexpression data to set research priorities in cardiac development research.
    VanBuren V
    Methods Mol Biol; 2012; 843():291-307. PubMed ID: 22222540
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts.
    Ouyang M; Garnett AT; Han TM; Hama K; Lee A; Deng Y; Lee N; Liu HY; Amacher SL; Farber SA; Ho SY
    Gene Expr Patterns; 2008 Feb; 8(3):171-80. PubMed ID: 18068546
    [TBL] [Abstract][Full Text] [Related]  

  • 6. WGCNA: an R package for weighted correlation network analysis.
    Langfelder P; Horvath S
    BMC Bioinformatics; 2008 Dec; 9():559. PubMed ID: 19114008
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.
    Lepoivre C; Bergon A; Lopez F; Perumal NB; Nguyen C; Imbert J; Puthier D
    BMC Bioinformatics; 2012 Jan; 13():19. PubMed ID: 22292669
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium.
    Moskvin OV; Bolotin D; Wang A; Ivanov PS; Gomelsky M
    Biosystems; 2011 Feb; 103(2):125-31. PubMed ID: 21070832
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
    Haverty PM; Frith MC; Weng Z
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W213-6. PubMed ID: 15215383
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MILANO--custom annotation of microarray results using automatic literature searches.
    Rubinstein R; Simon I
    BMC Bioinformatics; 2005 Jan; 6():12. PubMed ID: 15661078
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CAGER: classification analysis of gene expression regulation using multiple information sources.
    Ruan J; Zhang W
    BMC Bioinformatics; 2005 May; 6():114. PubMed ID: 15890068
    [TBL] [Abstract][Full Text] [Related]  

  • 12. VisANT: an online visualization and analysis tool for biological interaction data.
    Hu Z; Mellor J; Wu J; DeLisi C
    BMC Bioinformatics; 2004 Feb; 5():17. PubMed ID: 15028117
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data.
    Rawat A; Seifert GJ; Deng Y
    BMC Bioinformatics; 2008 Aug; 9 Suppl 9(Suppl 9):S7. PubMed ID: 18793471
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Manfield IW; Jen CH; Pinney JW; Michalopoulos I; Bradford JR; Gilmartin PM; Westhead DR
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W504-9. PubMed ID: 16845059
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GeneXplorer: an interactive web application for microarray data visualization and analysis.
    Rees CA; Demeter J; Matese JC; Botstein D; Sherlock G
    BMC Bioinformatics; 2004 Oct; 5():141. PubMed ID: 15458579
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.
    Lelandais G; Marc P; Vincens P; Jacq C; Vialette S
    BMC Bioinformatics; 2004 Mar; 5():20. PubMed ID: 15053844
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.
    Adler P; Kolde R; Kull M; Tkachenko A; Peterson H; Reimand J; Vilo J
    Genome Biol; 2009; 10(12):R139. PubMed ID: 19961599
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.
    Masseroli M; Martucci D; Pinciroli F
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W293-300. PubMed ID: 15215397
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ViTraM: visualization of transcriptional modules.
    Sun H; Lemmens K; Van den Bulcke T; Engelen K; De Moor B; Marchal K
    Bioinformatics; 2009 Sep; 25(18):2450-1. PubMed ID: 19587224
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ILOOP--a web application for two-channel microarray interwoven loop design.
    Pirooznia M; Gong P; Yang JY; Yang MQ; Perkins EJ; Deng Y
    BMC Genomics; 2008 Sep; 9 Suppl 2(Suppl 2):S11. PubMed ID: 18831776
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.