149 related articles for article (PubMed ID: 18333759)
21. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
Pierstorff N; Bergman CM; Wiehe T
Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
[TBL] [Abstract][Full Text] [Related]
22. Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.
Girgis HZ; Ovcharenko I
BMC Bioinformatics; 2012 Feb; 13():25. PubMed ID: 22313678
[TBL] [Abstract][Full Text] [Related]
23. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
[TBL] [Abstract][Full Text] [Related]
24. Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification.
Huang H; Kao MC; Zhou X; Liu JS; Wong WH
J Comput Biol; 2004; 11(1):1-14. PubMed ID: 15072685
[TBL] [Abstract][Full Text] [Related]
25. Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model.
Halfon MS; Grad Y; Church GM; Michelson AM
Genome Res; 2002 Jul; 12(7):1019-28. PubMed ID: 12097338
[TBL] [Abstract][Full Text] [Related]
26. cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.
Yang TH; Wang CC; Hung PC; Wu WS
BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S8. PubMed ID: 25521507
[TBL] [Abstract][Full Text] [Related]
27. Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.
Münch R; Hiller K; Grote A; Scheer M; Klein J; Schobert M; Jahn D
Bioinformatics; 2005 Nov; 21(22):4187-9. PubMed ID: 16109747
[TBL] [Abstract][Full Text] [Related]
28. Computational annotation of transcription factor binding sites in D. Melanogaster developmental genes.
Narang V; Sung WK; Mittal A
Genome Inform; 2006; 17(2):14-24. PubMed ID: 17503375
[TBL] [Abstract][Full Text] [Related]
29. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
Lee TY; Chang WC; Hsu JB; Chang TH; Shien DM
BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
[TBL] [Abstract][Full Text] [Related]
30. A New Algorithm for Identifying Cis-Regulatory Modules Based on Hidden Markov Model.
Guo H; Huo H
Biomed Res Int; 2017; 2017():6274513. PubMed ID: 28497059
[TBL] [Abstract][Full Text] [Related]
31. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.
Kel AE; Kel-Margoulis OV; Farnham PJ; Bartley SM; Wingender E; Zhang MQ
J Mol Biol; 2001 May; 309(1):99-120. PubMed ID: 11491305
[TBL] [Abstract][Full Text] [Related]
32. Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Rajewsky N; Vergassola M; Gaul U; Siggia ED
BMC Bioinformatics; 2002 Oct; 3():30. PubMed ID: 12398796
[TBL] [Abstract][Full Text] [Related]
33. Homotypic regulatory clusters in Drosophila.
Lifanov AP; Makeev VJ; Nazina AG; Papatsenko DA
Genome Res; 2003 Apr; 13(4):579-88. PubMed ID: 12670999
[TBL] [Abstract][Full Text] [Related]
34. Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses.
Li L; Zhu Q; He X; Sinha S; Halfon MS
Genome Biol; 2007; 8(6):R101. PubMed ID: 17550599
[TBL] [Abstract][Full Text] [Related]
35. Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
Grad YH; Roth FP; Halfon MS; Church GM
Bioinformatics; 2004 Nov; 20(16):2738-50. PubMed ID: 15145800
[TBL] [Abstract][Full Text] [Related]
36. Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.
Mathelier A; Lefebvre C; Zhang AW; Arenillas DJ; Ding J; Wasserman WW; Shah SP
Genome Biol; 2015 Apr; 16(1):84. PubMed ID: 25903198
[TBL] [Abstract][Full Text] [Related]
37. A probabilistic method to detect regulatory modules.
Sinha S; van Nimwegen E; Siggia ED
Bioinformatics; 2003; 19 Suppl 1():i292-301. PubMed ID: 12855472
[TBL] [Abstract][Full Text] [Related]
38. Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test.
Abnizova I; te Boekhorst R; Walter K; Gilks WR
BMC Bioinformatics; 2005 Apr; 6():109. PubMed ID: 15857505
[TBL] [Abstract][Full Text] [Related]
39. An integrated approach to identifying cis-regulatory modules in the human genome.
Won KJ; Agarwal S; Shen L; Shoemaker R; Ren B; Wang W
PLoS One; 2009; 4(5):e5501. PubMed ID: 19434238
[TBL] [Abstract][Full Text] [Related]
40. Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
Wong WS; Nielsen R
Bioinformatics; 2007 Aug; 23(16):2031-7. PubMed ID: 17550911
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
