259 related articles for article (PubMed ID: 18343092)
1. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
Buisine N; Quesneville H; Colot V
Genomics; 2008 May; 91(5):467-75. PubMed ID: 18343092
[TBL] [Abstract][Full Text] [Related]
2. Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.
Tempel S; Giraud M; Lavenier D; Lerman IC; Valin AS; Couée I; Amrani AE; Nicolas J
Bioinformatics; 2006 Aug; 22(16):1948-54. PubMed ID: 16809391
[TBL] [Abstract][Full Text] [Related]
3. Discovering and detecting transposable elements in genome sequences.
Bergman CM; Quesneville H
Brief Bioinform; 2007 Nov; 8(6):382-92. PubMed ID: 17932080
[TBL] [Abstract][Full Text] [Related]
4. Combined evidence annotation of transposable elements in genome sequences.
Quesneville H; Bergman CM; Andrieu O; Autard D; Nouaud D; Ashburner M; Anxolabehere D
PLoS Comput Biol; 2005 Jul; 1(2):166-75. PubMed ID: 16110336
[TBL] [Abstract][Full Text] [Related]
5. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
Kurtz S; Narechania A; Stein JC; Ware D
BMC Genomics; 2008 Oct; 9():517. PubMed ID: 18976482
[TBL] [Abstract][Full Text] [Related]
6. How to usefully compare homologous plant genes and chromosomes as DNA sequences.
Lyons E; Freeling M
Plant J; 2008 Feb; 53(4):661-73. PubMed ID: 18269575
[TBL] [Abstract][Full Text] [Related]
7. Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies.
Neafsey DE; Blumenstiel JP; Hartl DL
Mol Biol Evol; 2004 Dec; 21(12):2310-8. PubMed ID: 15342795
[TBL] [Abstract][Full Text] [Related]
8. Detection of transposable elements by their compositional bias.
Andrieu O; Fiston AS; Anxolabéhère D; Quesneville H
BMC Bioinformatics; 2004 Jul; 5():94. PubMed ID: 15251040
[TBL] [Abstract][Full Text] [Related]
9. Characterization and functional annotation of nested transposable elements in eukaryotic genomes.
Gao C; Xiao M; Ren X; Hayward A; Yin J; Wu L; Fu D; Li J
Genomics; 2012 Oct; 100(4):222-30. PubMed ID: 22800764
[TBL] [Abstract][Full Text] [Related]
10. Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.
Baduel P; Quadrana L; Colot V
Methods Mol Biol; 2021; 2250():157-169. PubMed ID: 33900602
[TBL] [Abstract][Full Text] [Related]
11. Computational analysis of transposable element sequences.
Jordan IK; Bowen NJ
Methods Mol Biol; 2004; 260():59-71. PubMed ID: 15020802
[TBL] [Abstract][Full Text] [Related]
12. A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley.
Wicker T; Taudien S; Houben A; Keller B; Graner A; Platzer M; Stein N
Plant J; 2009 Sep; 59(5):712-22. PubMed ID: 19453446
[TBL] [Abstract][Full Text] [Related]
13. Discovery of novel genes derived from transposable elements using integrative genomic analysis.
Hoen DR; Bureau TE
Mol Biol Evol; 2015 Jun; 32(6):1487-506. PubMed ID: 25713212
[TBL] [Abstract][Full Text] [Related]
14. TE-Tracker: systematic identification of transposition events through whole-genome resequencing.
Gilly A; Etcheverry M; Madoui MA; Guy J; Quadrana L; Alberti A; Martin A; Heitkam T; Engelen S; Labadie K; Le Pen J; Wincker P; Colot V; Aury JM
BMC Bioinformatics; 2014 Nov; 15(1):377. PubMed ID: 25408240
[TBL] [Abstract][Full Text] [Related]
15. Weeding out the genes: the Arabidopsis genome project.
Martienssen RA
Funct Integr Genomics; 2000 May; 1(1):2-11. PubMed ID: 11793217
[TBL] [Abstract][Full Text] [Related]
16. Considering transposable element diversification in de novo annotation approaches.
Flutre T; Duprat E; Feuillet C; Quesneville H
PLoS One; 2011 Jan; 6(1):e16526. PubMed ID: 21304975
[TBL] [Abstract][Full Text] [Related]
17. Analysis of transposable element sequences using CENSOR and RepeatMasker.
Huda A; Jordan IK
Methods Mol Biol; 2009; 537():323-36. PubMed ID: 19378152
[TBL] [Abstract][Full Text] [Related]
18. Transposable elements in reptilian and avian (sauropsida) genomes.
Kordis D
Cytogenet Genome Res; 2009; 127(2-4):94-111. PubMed ID: 20215725
[TBL] [Abstract][Full Text] [Related]
19. A shotgun approach to discovering and reconstructing consensus retrotransposons ex novo from dense contigs of short sequences derived from Genbank Genome Survey Sequence database records.
Laten HM; Mogil LS; Wright LN
Gene; 2009 Dec; 448(2):168-73. PubMed ID: 19560526
[TBL] [Abstract][Full Text] [Related]
20. Transposable element annotation of the rice genome.
Juretic N; Bureau TE; Bruskiewich RM
Bioinformatics; 2004 Jan; 20(2):155-60. PubMed ID: 14734305
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]