BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

548 related articles for article (PubMed ID: 18343699)

  • 1. Self-contacts in Asx and Glx residues of high-resolution protein structures: role of local environment and tertiary interactions.
    Pal TK; Sankararamakrishnan R
    J Mol Graph Model; 2008 Aug; 27(1):20-33. PubMed ID: 18343699
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantum chemical investigations on intraresidue carbonyl-carbonyl contacts in aspartates of high-resolution protein structures.
    Pal TK; Sankararamakrishnan R
    J Phys Chem B; 2010 Jan; 114(2):1038-49. PubMed ID: 20039723
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to residues ahead in sequence: their occurrence at alpha-helical N termini and in other situations.
    Wan WY; Milner-White EJ
    J Mol Biol; 1999 Mar; 286(5):1633-49. PubMed ID: 10064720
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S; Saven JG
    Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Conformational analysis of carboxylate and carboxamide side-chains bound to cations.
    Chakrabarti P
    J Mol Biol; 1994 Jun; 239(2):306-14. PubMed ID: 7910853
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K; Ramakumar S
    Proteins; 2004 Sep; 56(4):768-81. PubMed ID: 15281129
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities.
    Vijayakumar M; Qian H; Zhou HX
    Proteins; 1999 Mar; 34(4):497-507. PubMed ID: 10081962
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures.
    Eswar N; Ramakrishnan C
    Protein Eng; 2000 Apr; 13(4):227-38. PubMed ID: 10810153
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A recurring two-hydrogen-bond motif incorporating a serine or threonine residue is found both at alpha-helical N termini and in other situations.
    Wan WY; Milner-White EJ
    J Mol Biol; 1999 Mar; 286(5):1651-62. PubMed ID: 10064721
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Crystal structure of a glutamate/aspartate binding protein complexed with a glutamate molecule: structural basis of ligand specificity at atomic resolution.
    Hu Y; Fan CP; Fu G; Zhu D; Jin Q; Wang DC
    J Mol Biol; 2008 Sep; 382(1):99-111. PubMed ID: 18640128
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Patterns in ionizable side chain interactions in protein structures.
    Gandini D; Gogioso L; Bolognesi M; Bordo D
    Proteins; 1996 Apr; 24(4):439-49. PubMed ID: 9162945
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.
    Russell RB; Barton GJ
    J Mol Biol; 1994 Dec; 244(3):332-50. PubMed ID: 7966343
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
    Word JM; Lovell SC; Richardson JS; Richardson DC
    J Mol Biol; 1999 Jan; 285(4):1735-47. PubMed ID: 9917408
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Statistical analysis of atomic contacts at RNA-protein interfaces.
    Treger M; Westhof E
    J Mol Recognit; 2001; 14(4):199-214. PubMed ID: 11500966
    [TBL] [Abstract][Full Text] [Related]  

  • 16. [Systematic analysis of buried polar side chains and their interactions in alpha-helical proteins].
    Kondratova MS; Efimov AV
    Mol Biol (Mosk); 2002; 36(1):144-51. PubMed ID: 11862705
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Tolerance to the substitution of buried apolar residues by charged residues in the homologous protein structures.
    Balaji S; Aruna S; Srinivasan N
    Proteins; 2003 Dec; 53(4):783-91. PubMed ID: 14635121
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
    Adamian L; Liang J
    J Mol Biol; 2001 Aug; 311(4):891-907. PubMed ID: 11518538
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A logical OR redundancy within the Asx-Pro-Asx-Gly type I beta-turn motif.
    Lee J; Dubey VK; Longo LM; Blaber M
    J Mol Biol; 2008 Apr; 377(4):1251-64. PubMed ID: 18308335
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Environment of tryptophan side chains in proteins.
    Samanta U; Pal D; Chakrabarti P
    Proteins; 2000 Feb; 38(3):288-300. PubMed ID: 10713989
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 28.