BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 18348560)

  • 21. Assessing AMBER force fields for protein folding in an implicit solvent.
    Shao Q; Zhu W
    Phys Chem Chem Phys; 2018 Mar; 20(10):7206-7216. PubMed ID: 29480910
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Effects of different force fields on the structural character of α synuclein β-hairpin peptide (35-56) in aqueous environment.
    Kundu S
    J Biomol Struct Dyn; 2018 Feb; 36(2):302-317. PubMed ID: 28024449
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Dimer formation enhances structural differences between amyloid β-protein (1-40) and (1-42): an explicit-solvent molecular dynamics study.
    Barz B; Urbanc B
    PLoS One; 2012; 7(4):e34345. PubMed ID: 22509291
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Beta2-microglobulin amyloid fragment organization and morphology and its comparison to Abeta suggests that amyloid aggregation pathways are sequence specific.
    Zheng J; Jang H; Nussinov R
    Biochemistry; 2008 Feb; 47(8):2497-509. PubMed ID: 18215070
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Multiscale Modeling of Amyloid Fibrils Formed by Aggregating Peptides Derived from the Amyloidogenic Fragment of the A-Chain of Insulin.
    Koliński M; Dec R; Dzwolak W
    Int J Mol Sci; 2021 Nov; 22(22):. PubMed ID: 34830214
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding.
    Daidone I; Ulmschneider MB; Di Nola A; Amadei A; Smith JC
    Proc Natl Acad Sci U S A; 2007 Sep; 104(39):15230-5. PubMed ID: 17881585
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Conformational sampling with implicit solvent models: application to the PHF6 peptide in tau protein.
    Huang A; Stultz CM
    Biophys J; 2007 Jan; 92(1):34-45. PubMed ID: 17040986
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Structure and dynamics of the Abeta(21-30) peptide from the interplay of NMR experiments and molecular simulations.
    Fawzi NL; Phillips AH; Ruscio JZ; Doucleff M; Wemmer DE; Head-Gordon T
    J Am Chem Soc; 2008 May; 130(19):6145-58. PubMed ID: 18412346
    [TBL] [Abstract][Full Text] [Related]  

  • 29. General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
    Shabane PS; Izadi S; Onufriev AV
    J Chem Theory Comput; 2019 Apr; 15(4):2620-2634. PubMed ID: 30865832
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A test of implicit solvent models on the folding simulation of the GB1 peptide.
    Shao Q; Yang L; Gao YQ
    J Chem Phys; 2009 May; 130(19):195104. PubMed ID: 19466868
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Structure of the 21-30 fragment of amyloid beta-protein.
    Baumketner A; Bernstein SL; Wyttenbach T; Lazo ND; Teplow DB; Bowers MT; Shea JE
    Protein Sci; 2006 Jun; 15(6):1239-47. PubMed ID: 16731963
    [TBL] [Abstract][Full Text] [Related]  

  • 32. The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.
    Baumketner A; Shea JE
    J Mol Biol; 2007 Feb; 366(1):275-85. PubMed ID: 17166516
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Effect of Taiwan mutation (D7H) on structures of amyloid-β peptides: replica exchange molecular dynamics study.
    Truong PM; Viet MH; Nguyen PH; Hu CK; Li MS
    J Phys Chem B; 2014 Jul; 118(30):8972-81. PubMed ID: 25010208
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Secondary structure dependence of amyloid-β(1-40) on simulation techniques and force field parameters.
    Caliskan M; Mandaci SY; Uversky VN; Coskuner-Weber O
    Chem Biol Drug Des; 2021 May; 97(5):1100-1108. PubMed ID: 33580600
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Comparing the influence of explicit and implicit solvation models on site-specific thermodynamic stability of proteins.
    Cho MK; Chong SH; Ham S; Shin S
    J Comput Chem; 2023 Sep; 44(25):1976-1985. PubMed ID: 37352129
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Side-chain hydrophobicity and the stability of Aβ₁₆₋₂₂ aggregates.
    Berhanu WM; Hansmann UH
    Protein Sci; 2012 Dec; 21(12):1837-48. PubMed ID: 23015407
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Characterizing amyloid-beta protein misfolding from molecular dynamics simulations with explicit water.
    Lee C; Ham S
    J Comput Chem; 2011 Jan; 32(2):349-55. PubMed ID: 20734314
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Characterization of Aβ Monomers through the Convergence of Ensemble Properties among Simulations with Multiple Force Fields.
    Rosenman DJ; Wang C; García AE
    J Phys Chem B; 2016 Jan; 120(2):259-77. PubMed ID: 26562747
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?
    Zhou R; Berne BJ
    Proc Natl Acad Sci U S A; 2002 Oct; 99(20):12777-82. PubMed ID: 12242327
    [TBL] [Abstract][Full Text] [Related]  

  • 40. CHARMM fluctuating charge force field for proteins: II protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model.
    Patel S; Mackerell AD; Brooks CL
    J Comput Chem; 2004 Sep; 25(12):1504-14. PubMed ID: 15224394
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.