134 related articles for article (PubMed ID: 18361760)
1. Space efficient computation of rare maximal exact matches between multiple sequences.
Ohlebusch E; Kurtz S
J Comput Biol; 2008 May; 15(4):357-77. PubMed ID: 18361760
[TBL] [Abstract][Full Text] [Related]
2. Efficient estimation of pairwise distances between genomes.
Domazet-Loso M; Haubold B
Bioinformatics; 2009 Dec; 25(24):3221-7. PubMed ID: 19825795
[TBL] [Abstract][Full Text] [Related]
3. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
4. A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.
Khan Z; Bloom JS; Kruglyak L; Singh M
Bioinformatics; 2009 Jul; 25(13):1609-16. PubMed ID: 19389736
[TBL] [Abstract][Full Text] [Related]
5. E-MEM: efficient computation of maximal exact matches for very large genomes.
Khiste N; Ilie L
Bioinformatics; 2015 Feb; 31(4):509-14. PubMed ID: 25399029
[TBL] [Abstract][Full Text] [Related]
6. The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences.
Schulz MH; Bauer S; Robinson PN
Int J Bioinform Res Appl; 2008; 4(1):81-95. PubMed ID: 18283030
[TBL] [Abstract][Full Text] [Related]
7. andi: fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B; Klötzl F; Pfaffelhuber P
Bioinformatics; 2015 Apr; 31(8):1169-75. PubMed ID: 25504847
[TBL] [Abstract][Full Text] [Related]
8. SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size.
Giladi E; Walker MG; Wang JZ; Volkmuth W
Bioinformatics; 2002 Jun; 18(6):873-7. PubMed ID: 12075023
[TBL] [Abstract][Full Text] [Related]
9. Compressed suffix tree--a basis for genome-scale sequence analysis.
Välimäki N; Gerlach W; Dixit K; Mäkinen V
Bioinformatics; 2007 Mar; 23(5):629-30. PubMed ID: 17237063
[TBL] [Abstract][Full Text] [Related]
10. Sequence comparison alignment-free approach based on suffix tree and L-words frequency.
Soares I; Goios A; Amorim A
ScientificWorldJournal; 2012; 2012():450124. PubMed ID: 22997494
[TBL] [Abstract][Full Text] [Related]
11. slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.
Fernandes F; Freitas AT
Bioinformatics; 2014 Feb; 30(4):464-71. PubMed ID: 24336412
[TBL] [Abstract][Full Text] [Related]
12. Space-efficient whole genome comparisons with Burrows-Wheeler transforms.
Lippert RA
J Comput Biol; 2005 May; 12(4):407-15. PubMed ID: 15882139
[TBL] [Abstract][Full Text] [Related]
13. Linear-time computation of minimal absent words using suffix array.
Barton C; Heliou A; Mouchard L; Pissis SP
BMC Bioinformatics; 2014 Dec; 15(1):388. PubMed ID: 25526884
[TBL] [Abstract][Full Text] [Related]
14. Kalign--an accurate and fast multiple sequence alignment algorithm.
Lassmann T; Sonnhammer EL
BMC Bioinformatics; 2005 Dec; 6():298. PubMed ID: 16343337
[TBL] [Abstract][Full Text] [Related]
15. Efficient q-gram filters for finding all epsilon-matches over a given length.
Rasmussen KR; Stoye J; Myers EW
J Comput Biol; 2006 Mar; 13(2):296-308. PubMed ID: 16597241
[TBL] [Abstract][Full Text] [Related]
16. A novel method for comparative analysis of DNA sequences by Ramanujan-Fourier transform.
Yin C; Yin XE; Wang J
J Comput Biol; 2014 Dec; 21(12):867-79. PubMed ID: 25302665
[TBL] [Abstract][Full Text] [Related]
17. CLAGen: a tool for clustering and annotating gene sequences using a suffix tree algorithm.
Han Si; Lee SG; Kim KH; Choi CJ; Kim YH; Hwang KS
Biosystems; 2006 Jun; 84(3):175-82. PubMed ID: 16384634
[TBL] [Abstract][Full Text] [Related]
18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
19. Weighted relative entropy for alignment-free sequence comparison based on Markov model.
Chang G; Wang T
J Biomol Struct Dyn; 2011 Feb; 28(4):545-55. PubMed ID: 21142223
[TBL] [Abstract][Full Text] [Related]
20. VISTA family of computational tools for comparative analysis of DNA sequences and whole genomes.
Dubchak I; Ryaboy DV
Methods Mol Biol; 2006; 338():69-89. PubMed ID: 16888351
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
