BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

178 related articles for article (PubMed ID: 18369429)

  • 1. Statistical modeling of transcription factor binding affinities predicts regulatory interactions.
    Manke T; Roider HG; Vingron M
    PLoS Comput Biol; 2008 Mar; 4(3):e1000039. PubMed ID: 18369429
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Searching for statistically significant regulatory modules.
    Bailey TL; Noble WS
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii16-25. PubMed ID: 14534166
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Foat BC; Morozov AV; Bussemaker HJ
    Bioinformatics; 2006 Jul; 22(14):e141-9. PubMed ID: 16873464
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bounded search for de novo identification of degenerate cis-regulatory elements.
    Carlson JM; Chakravarty A; Khetani RS; Gross RH
    BMC Bioinformatics; 2006 May; 7():254. PubMed ID: 16700920
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Statistical significance of cis-regulatory modules.
    Schones DE; Smith AD; Zhang MQ
    BMC Bioinformatics; 2007 Jan; 8():19. PubMed ID: 17241466
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An equilibrium partitioning model connecting gene expression and cis-motif content.
    Mellor J; DeLisi C
    Bioinformatics; 2006 Jul; 22(14):e368-74. PubMed ID: 16873495
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.
    He X; Ling X; Sinha S
    PLoS Comput Biol; 2009 Mar; 5(3):e1000299. PubMed ID: 19293946
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Phylogeny based discovery of regulatory elements.
    Gertz J; Fay JC; Cohen BA
    BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Context specific transcription factor prediction.
    Yang E; Simcha D; Almon RR; Dubois DC; Jusko WJ; Androulakis IP
    Ann Biomed Eng; 2007 Jun; 35(6):1053-67. PubMed ID: 17377845
    [TBL] [Abstract][Full Text] [Related]  

  • 11. In silico modelling of hormone response elements.
    Stepanova M; Lin F; Lin VC
    BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S27. PubMed ID: 17217520
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Adding sequence context to a Markov background model improves the identification of regulatory elements.
    Kim NK; Tharakaraman K; Spouge JL
    Bioinformatics; 2006 Dec; 22(23):2870-5. PubMed ID: 17068091
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.
    Reddy TE; DeLisi C; Shakhnovich BE
    PLoS Comput Biol; 2007 May; 3(5):e90. PubMed ID: 17500587
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Recognition of cis-regulatory elements with vombat.
    Posch S; Grau J; Gohr A; Ben-Gal I; Kel AE; Grosse I
    J Bioinform Comput Biol; 2007 Apr; 5(2B):561-77. PubMed ID: 17636862
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Chen X; Hughes TR; Morris Q
    Bioinformatics; 2007 Jul; 23(13):i72-9. PubMed ID: 17646348
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S
    Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting transcription factor affinities to DNA from a biophysical model.
    Roider HG; Kanhere A; Manke T; Vingron M
    Bioinformatics; 2007 Jan; 23(2):134-41. PubMed ID: 17098775
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Context-specific independence mixture modeling for positional weight matrices.
    Georgi B; Schliep A
    Bioinformatics; 2006 Jul; 22(14):e166-73. PubMed ID: 16873468
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
    Hannenhalli S
    Bioinformatics; 2008 Jun; 24(11):1325-31. PubMed ID: 18426806
    [TBL] [Abstract][Full Text] [Related]  

  • 20. OSCAR: one-class SVM for accurate recognition of cis-elements.
    Jiang B; Zhang MQ; Zhang X
    Bioinformatics; 2007 Nov; 23(21):2823-8. PubMed ID: 17921174
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.