BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 18373871)

  • 1. Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability.
    Cao Y; Liang J
    BMC Syst Biol; 2008 Mar; 2():30. PubMed ID: 18373871
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An optimal algorithm for enumerating state space of stochastic molecular networks with small copy numbers of molecules.
    Cao Y; Liang J
    Annu Int Conf IEEE Eng Med Biol Soc; 2007; 2007():4599-602. PubMed ID: 18003030
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ACCURATE CHEMICAL MASTER EQUATION SOLUTION USING MULTI-FINITE BUFFERS.
    Cao Y; Terebus A; Liang J
    Multiscale Model Simul; 2016; 14(2):923-963. PubMed ID: 27761104
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exact computation of probability landscape of stochastic networks of Single Input and Coupled Toggle Switch Modules.
    Terebus A; Cao Y; Liang J
    Annu Int Conf IEEE Eng Med Biol Soc; 2014; 2014():5228-31. PubMed ID: 25571172
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mechanisms of stochastic focusing and defocusing in biological reaction networks: insight from accurate chemical master equation (ACME) solutions.
    Gursoy G; Terebus A; Youfang Cao ; Jie Liang
    Annu Int Conf IEEE Eng Med Biol Soc; 2016 Aug; 2016():1480-1483. PubMed ID: 28268606
    [TBL] [Abstract][Full Text] [Related]  

  • 6. State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation.
    Cao Y; Terebus A; Liang J
    Bull Math Biol; 2016 Apr; 78(4):617-661. PubMed ID: 27105653
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method.
    Cao Y; Liang J
    J Chem Phys; 2013 Jul; 139(2):025101. PubMed ID: 23862966
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Periodic synchronization of isolated network elements facilitates simulating and inferring gene regulatory networks including stochastic molecular kinetics.
    Hettich J; Gebhardt JCM
    BMC Bioinformatics; 2022 Jan; 23(1):13. PubMed ID: 34986805
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A dominated coupling from the past algorithm for the stochastic simulation of networks of biochemical reactions.
    Hemberg M; Barahona M
    BMC Syst Biol; 2008 May; 2():42. PubMed ID: 18466612
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PRODIGEN: visualizing the probability landscape of stochastic gene regulatory networks in state and time space.
    Ma C; Luciani T; Terebus A; Liang J; Marai GE
    BMC Bioinformatics; 2017 Feb; 18(Suppl 2):24. PubMed ID: 28251874
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks.
    Ching WK; Zhang S; Ng MK; Akutsu T
    Bioinformatics; 2007 Jun; 23(12):1511-8. PubMed ID: 17463027
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DeepCME: A deep learning framework for computing solution statistics of the chemical master equation.
    Gupta A; Schwab C; Khammash M
    PLoS Comput Biol; 2021 Dec; 17(12):e1009623. PubMed ID: 34879062
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Gene perturbation and intervention in context-sensitive stochastic Boolean networks.
    Zhu P; Liang J; Han J
    BMC Syst Biol; 2014 May; 8():60. PubMed ID: 24886608
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting.
    Pájaro M; Alonso AA; Otero-Muras I; Vázquez C
    J Theor Biol; 2017 May; 421():51-70. PubMed ID: 28341132
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm.
    Sidje RB; Vo HD
    Math Biosci; 2015 Nov; 269():10-6. PubMed ID: 26319118
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks.
    Albert J
    PLoS One; 2016; 11(3):e0149909. PubMed ID: 26930199
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Adaptive hybrid simulations for multiscale stochastic reaction networks.
    Hepp B; Gupta A; Khammash M
    J Chem Phys; 2015 Jan; 142(3):034118. PubMed ID: 25612700
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks.
    Salis H; Kaznessis YN
    J Chem Phys; 2005 Dec; 123(21):214106. PubMed ID: 16356038
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exact Probability Landscapes of Stochastic Phenotype Switching in Feed-Forward Loops: Phase Diagrams of Multimodality.
    Terebus A; Manuchehrfar F; Cao Y; Liang J
    Front Genet; 2021; 12():645640. PubMed ID: 34306004
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computation of steady-state probability distributions in stochastic models of cellular networks.
    Hallen M; Li B; Tanouchi Y; Tan C; West M; You L
    PLoS Comput Biol; 2011 Oct; 7(10):e1002209. PubMed ID: 22022252
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.