206 related articles for article (PubMed ID: 18388141)
21. MochiView: versatile software for genome browsing and DNA motif analysis.
Homann OR; Johnson AD
BMC Biol; 2010 Apr; 8():49. PubMed ID: 20409324
[TBL] [Abstract][Full Text] [Related]
22. CREx: inferring genomic rearrangements based on common intervals.
Bernt M; Merkle D; Ramsch K; Fritzsch G; Perseke M; Bernhard D; Schlegel M; Stadler PF; Middendorf M
Bioinformatics; 2007 Nov; 23(21):2957-8. PubMed ID: 17895271
[TBL] [Abstract][Full Text] [Related]
23. MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly.
Xu J; Gordon JI
Bioinformatics; 2005 Apr; 21(7):1265-6. PubMed ID: 15572475
[TBL] [Abstract][Full Text] [Related]
24. Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data.
Barozzi I; Termanini A; Minucci S; Natoli G
Biol Direct; 2011 Oct; 6():51. PubMed ID: 21978789
[TBL] [Abstract][Full Text] [Related]
25. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology.
Fejes AP; Robertson G; Bilenky M; Varhol R; Bainbridge M; Jones SJ
Bioinformatics; 2008 Aug; 24(15):1729-30. PubMed ID: 18599518
[TBL] [Abstract][Full Text] [Related]
26. Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts.
Toedling J; Skylar O; Krueger T; Fischer JJ; Sperling S; Huber W
BMC Bioinformatics; 2007 Jun; 8():221. PubMed ID: 17594472
[TBL] [Abstract][Full Text] [Related]
27. PLATCOM: a Platform for Computational Comparative Genomics.
Choi K; Ma Y; Choi JH; Kim S
Bioinformatics; 2005 May; 21(10):2514-6. PubMed ID: 15731206
[TBL] [Abstract][Full Text] [Related]
28. Software for rapid time dependent ChIP-sequencing analysis (TDCA).
Myschyshyn M; Farren-Dai M; Chuang TJ; Vocadlo D
BMC Bioinformatics; 2017 Nov; 18(1):521. PubMed ID: 29178831
[TBL] [Abstract][Full Text] [Related]
29. Using combined evidence from replicates to evaluate ChIP-seq peaks.
Jalili V; Matteucci M; Masseroli M; Morelli MJ
Bioinformatics; 2015 Sep; 31(17):2761-9. PubMed ID: 25957351
[TBL] [Abstract][Full Text] [Related]
30. Interpreting and visualizing ChIP-seq data with the seqMINER software.
Ye T; Ravens S; Krebs AR; Tora L
Methods Mol Biol; 2014; 1150():141-52. PubMed ID: 24743995
[TBL] [Abstract][Full Text] [Related]
31. Visualization techniques for genomic data.
Loraine AE; Helt GA
Proc IEEE Comput Soc Bioinform Conf; 2002; 1():321-6. PubMed ID: 15838148
[TBL] [Abstract][Full Text] [Related]
32. SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.
Oki S; Maehara K; Ohkawa Y; Meno C
Genes Cells; 2014 Dec; 19(12):919-26. PubMed ID: 25324176
[TBL] [Abstract][Full Text] [Related]
33. eQTL Viewer: visualizing how sequence variation affects genome-wide transcription.
Zou W; Aylor DL; Zeng ZB
BMC Bioinformatics; 2007 Jan; 8():7. PubMed ID: 17212828
[TBL] [Abstract][Full Text] [Related]
34. Genomorama: genome visualization and analysis.
Gans JD; Wolinsky M
BMC Bioinformatics; 2007 Jun; 8():204. PubMed ID: 17570856
[TBL] [Abstract][Full Text] [Related]
35. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.
Ambrosini G; Dreos R; Kumar S; Bucher P
BMC Genomics; 2016 Nov; 17(1):938. PubMed ID: 27863463
[TBL] [Abstract][Full Text] [Related]
36. Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.
Kin T; Ono Y
Bioinformatics; 2007 Nov; 23(21):2945-6. PubMed ID: 17893084
[TBL] [Abstract][Full Text] [Related]
37. Genome Modeling System: A Knowledge Management Platform for Genomics.
Griffith M; Griffith OL; Smith SM; Ramu A; Callaway MB; Brummett AM; Kiwala MJ; Coffman AC; Regier AA; Oberkfell BJ; Sanderson GE; Mooney TP; Nutter NG; Belter EA; Du F; Long RL; Abbott TE; Ferguson IT; Morton DL; Burnett MM; Weible JV; Peck JB; Dukes A; McMichael JF; Lolofie JT; Derickson BR; Hundal J; Skidmore ZL; Ainscough BJ; Dees ND; Schierding WS; Kandoth C; Kim KH; Lu C; Harris CC; Maher N; Maher CA; Magrini VJ; Abbott BS; Chen K; Clark E; Das I; Fan X; Hawkins AE; Hepler TG; Wylie TN; Leonard SM; Schroeder WE; Shi X; Carmichael LK; Weil MR; Wohlstadter RW; Stiehr G; McLellan MD; Pohl CS; Miller CA; Koboldt DC; Walker JR; Eldred JM; Larson DE; Dooling DJ; Ding L; Mardis ER; Wilson RK
PLoS Comput Biol; 2015 Jul; 11(7):e1004274. PubMed ID: 26158448
[TBL] [Abstract][Full Text] [Related]
38. Using the Generic Genome Browser (GBrowse).
Donlin MJ
Curr Protoc Bioinformatics; 2007 Mar; Chapter 9():Unit 9.9. PubMed ID: 18428797
[TBL] [Abstract][Full Text] [Related]
39. BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bartels D; Kespohl S; Albaum S; Drüke T; Goesmann A; Herold J; Kaiser O; Pühler A; Pfeiffer F; Raddatz G; Stoye J; Meyer F; Schuster SC
Bioinformatics; 2005 Apr; 21(7):853-9. PubMed ID: 15514001
[TBL] [Abstract][Full Text] [Related]
40. inGAP: an integrated next-generation genome analysis pipeline.
Qi J; Zhao F; Buboltz A; Schuster SC
Bioinformatics; 2010 Jan; 26(1):127-9. PubMed ID: 19880367
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]