BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

161 related articles for article (PubMed ID: 18422353)

  • 1. Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.
    Du X; Yang F; Manes NP; Stenoien DL; Monroe ME; Adkins JN; States DJ; Purvine SO; Camp DG; Smith RD
    J Proteome Res; 2008 Jun; 7(6):2195-203. PubMed ID: 18422353
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy.
    Jiang X; Han G; Feng S; Jiang X; Ye M; Yao X; Zou H
    J Proteome Res; 2008 Apr; 7(4):1640-9. PubMed ID: 18314942
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Increased confidence in large-scale phosphoproteomics data by complementary mass spectrometric techniques and matching of phosphopeptide data sets.
    Alcolea MP; Kleiner O; Cutillas PR
    J Proteome Res; 2009 Aug; 8(8):3808-15. PubMed ID: 19537829
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation.
    Collins MO; Wright JC; Jones M; Rayner JC; Choudhary JS
    J Proteomics; 2014 May; 103(100):1-14. PubMed ID: 24657495
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Colander: a probability-based support vector machine algorithm for automatic screening for CID spectra of phosphopeptides prior to database search.
    Lu B; Ruse CI; Yates JR
    J Proteome Res; 2008 Aug; 7(8):3628-34. PubMed ID: 18563924
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reference-facilitated phosphoproteomics: fast and reliable phosphopeptide validation by microLC-ESI-Q-TOF MS/MS.
    Imanishi SY; Kochin V; Ferraris SE; de Thonel A; Pallari HM; Corthals GL; Eriksson JE
    Mol Cell Proteomics; 2007 Aug; 6(8):1380-91. PubMed ID: 17510049
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry.
    Martin DM; Nett IR; Vandermoere F; Barber JD; Morrice NA; Ferguson MA
    Bioinformatics; 2010 Sep; 26(17):2153-9. PubMed ID: 20651112
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Automatic validation of phosphopeptide identifications from tandem mass spectra.
    Lu B; Ruse C; Xu T; Park SK; Yates J
    Anal Chem; 2007 Feb; 79(4):1301-10. PubMed ID: 17297928
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry.
    Fu Y; Qian X
    Mol Cell Proteomics; 2014 May; 13(5):1359-68. PubMed ID: 24200586
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
    Yu LR; Zhu Z; Chan KC; Issaq HJ; Dimitrov DS; Veenstra TD
    J Proteome Res; 2007 Nov; 6(11):4150-62. PubMed ID: 17924679
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.
    Yang TH; Chang HT; Hsiao ES; Sun JL; Wang CC; Wu HY; Liao PC; Wu WS
    BMC Bioinformatics; 2014; 15 Suppl 16(Suppl 16):S10. PubMed ID: 25521246
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Classification filtering strategy to improve the coverage and sensitivity of phosphoproteome analysis.
    Jiang X; Ye M; Han G; Dong X; Zou H
    Anal Chem; 2010 Jul; 82(14):6168-75. PubMed ID: 20568719
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Phosphoproteomics with the Production of over 11,000 Phosphopeptides from the Colon Carcinoma HCT116 Cell Line.
    Chen D; Ludwig KR; Krokhin OV; Spicer V; Yang Z; Shen X; Hummon AB; Sun L
    Anal Chem; 2019 Feb; 91(3):2201-2208. PubMed ID: 30624053
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of data analysis strategies for improved mass spectrometry-based phosphoproteomics.
    Savitski MM; Scholten A; Sweetman G; Mathieson T; Bantscheff M
    Anal Chem; 2010 Dec; 82(23):9843-9. PubMed ID: 21033674
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets.
    Savitski MM; Wilhelm M; Hahne H; Kuster B; Bantscheff M
    Mol Cell Proteomics; 2015 Sep; 14(9):2394-404. PubMed ID: 25987413
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Confident site localization using a simulated phosphopeptide spectral library.
    Suni V; Imanishi SY; Maiolica A; Aebersold R; Corthals GL
    J Proteome Res; 2015 May; 14(5):2348-59. PubMed ID: 25774671
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A hierarchical MS2/MS3 database search algorithm for automated analysis of phosphopeptide tandem mass spectra.
    Xu H; Wang L; Sallans L; Freitas MA
    Proteomics; 2009 Apr; 9(7):1763-70. PubMed ID: 19288523
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Simultaneous quantification of protein phosphorylation sites using liquid chromatography-tandem mass spectrometry-based targeted proteomics: a linear algebra approach for isobaric phosphopeptides.
    Xu F; Yang T; Sheng Y; Zhong T; Yang M; Chen Y
    J Proteome Res; 2014 Dec; 13(12):5452-60. PubMed ID: 25403019
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Importance of manual validation for the identification of phosphopeptides using a linear ion trap mass spectrometer.
    Goldstrohm DA; Broeckling CD; Prenni JE; Curthoys NP
    J Biomol Tech; 2011 Apr; 22(1):10-20. PubMed ID: 21455477
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Confident phosphorylation site localization using the Mascot Delta Score.
    Savitski MM; Lemeer S; Boesche M; Lang M; Mathieson T; Bantscheff M; Kuster B
    Mol Cell Proteomics; 2011 Feb; 10(2):M110.003830. PubMed ID: 21057138
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.