272 related articles for article (PubMed ID: 18428716)
1. RNA secondary structure analysis using the Vienna RNA package.
Hofacker IL
Curr Protoc Bioinformatics; 2004 Feb; Chapter 12():Unit 12.2. PubMed ID: 18428716
[TBL] [Abstract][Full Text] [Related]
2. Memory efficient folding algorithms for circular RNA secondary structures.
Hofacker IL; Stadler PF
Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
[TBL] [Abstract][Full Text] [Related]
3. Predicting the secondary structure common to two RNA sequences with Dynalign.
Mathews D
Curr Protoc Bioinformatics; 2004 Dec; Chapter 12():Unit 12.4. PubMed ID: 18428718
[TBL] [Abstract][Full Text] [Related]
4. RNA secondary structure analysis using the Vienna RNA package.
Hofacker IL
Curr Protoc Bioinformatics; 2009 Jun; Chapter 12():12.2.1-12.2.16. PubMed ID: 19496057
[TBL] [Abstract][Full Text] [Related]
5. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
Xu X; Ji Y; Stormo GD
Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
[TBL] [Abstract][Full Text] [Related]
6. RNA secondary structure analysis using RNAstructure.
Mathews DH
Curr Protoc Bioinformatics; 2006 Mar; Chapter 12():Unit 12.6. PubMed ID: 18428759
[TBL] [Abstract][Full Text] [Related]
7. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
8. INFO-RNA--a fast approach to inverse RNA folding.
Busch A; Backofen R
Bioinformatics; 2006 Aug; 22(15):1823-31. PubMed ID: 16709587
[TBL] [Abstract][Full Text] [Related]
9. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
10. Vienna RNA secondary structure server.
Hofacker IL
Nucleic Acids Res; 2003 Jul; 31(13):3429-31. PubMed ID: 12824340
[TBL] [Abstract][Full Text] [Related]
11. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
12. RNA secondary structure design.
Burghardt B; Hartmann AK
Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Feb; 75(2 Pt 1):021920. PubMed ID: 17358380
[TBL] [Abstract][Full Text] [Related]
13. Ensemble-based RNA secondary structure characterization.
Crozier SP; Garner HR
IEEE Eng Med Biol Mag; 2007; 26(1):72-86. PubMed ID: 17278775
[No Abstract] [Full Text] [Related]
14. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
15. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
16. RNAshapes: an integrated RNA analysis package based on abstract shapes.
Steffen P; Voss B; Rehmsmeier M; Reeder J; Giegerich R
Bioinformatics; 2006 Feb; 22(4):500-3. PubMed ID: 16357029
[TBL] [Abstract][Full Text] [Related]
17. A New Method to Predict RNA Secondary Structure Based on RNA Folding Simulation.
Liu Y; Zhao Q; Zhang H; Xu R; Li Y; Wei L
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(5):990-995. PubMed ID: 26552091
[TBL] [Abstract][Full Text] [Related]
18. A rule-based approach for RNA pseudoknot prediction.
Fu XZ; Wang H; Harrison RW; Harrison WL
Int J Data Min Bioinform; 2008; 2(1):78-93. PubMed ID: 18399329
[TBL] [Abstract][Full Text] [Related]
19. Structure clustering features on the Sfold Web server.
Chan CY; Lawrence CE; Ding Y
Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
[TBL] [Abstract][Full Text] [Related]
20. Efficient parameter estimation for RNA secondary structure prediction.
Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]