BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 18428787)

  • 1. Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data.
    Leduc RD; Kelleher NL
    Curr Protoc Bioinformatics; 2007 Sep; Chapter 13():Unit 13.6. PubMed ID: 18428787
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Zamdborg L; LeDuc RD; Glowacz KJ; Kim YB; Viswanathan V; Spaulding IT; Early BP; Bluhm EJ; Babai S; Kelleher NL
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W701-6. PubMed ID: 17586823
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences.
    Barsnes H; Mikalsen SO; Eidhammer I
    BMC Bioinformatics; 2006 Jan; 7():42. PubMed ID: 16438723
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Web and database software for identification of intact proteins using "top down" mass spectrometry.
    Taylor GK; Kim YB; Forbes AJ; Meng F; McCarthy R; Kelleher NL
    Anal Chem; 2003 Aug; 75(16):4081-6. PubMed ID: 14632120
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
    LeDuc RD; Taylor GK; Kim YB; Januszyk TE; Bynum LH; Sola JV; Garavelli JS; Kelleher NL
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W340-5. PubMed ID: 15215407
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.
    Lu B; Chen T
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii113-21. PubMed ID: 14534180
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of post-translational modifications via blind search of mass-spectra.
    Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():157-66. PubMed ID: 16447973
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mMass data miner: an open source alternative for mass spectrometric data analysis.
    Strohalm M; Hassman M; Kosata B; Kodícek M
    Rapid Commun Mass Spectrom; 2008; 22(6):905-8. PubMed ID: 18293430
    [No Abstract]   [Full Text] [Related]  

  • 9. Feature selection in validating mass spectrometry database search results.
    Fang J; Dong Y; Williams TD; Lushington GH
    J Bioinform Comput Biol; 2008 Feb; 6(1):223-40. PubMed ID: 18324754
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra.
    Roos FF; Jacob R; Grossmann J; Fischer B; Buhmann JM; Gruissem W; Baginsky S; Widmayer P
    Bioinformatics; 2007 Nov; 23(22):3016-23. PubMed ID: 17768164
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using BiblioSpec for creating and searching tandem MS peptide libraries.
    Frewen B; MacCoss MJ
    Curr Protoc Bioinformatics; 2007 Dec; Chapter 13():13.7.1-13.7.12. PubMed ID: 18428681
    [TBL] [Abstract][Full Text] [Related]  

  • 12. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics.
    Jiang X; Jiang X; Han G; Ye M; Zou H
    BMC Bioinformatics; 2007 Aug; 8():323. PubMed ID: 17761002
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
    Hummel J; Niemann M; Wienkoop S; Schulze W; Steinhauser D; Selbig J; Walther D; Weckwerth W
    BMC Bioinformatics; 2007 Jun; 8():216. PubMed ID: 17587460
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.
    Titulaer MK; Siccama I; Dekker LJ; van Rijswijk AL; Heeren RM; Sillevis Smitt PA; Luider TM
    BMC Bioinformatics; 2006 Sep; 7():403. PubMed ID: 16953879
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.
    Yan B; Pan C; Olman VN; Hettich RL; Xu Y
    Bioinformatics; 2005 Mar; 21(5):563-74. PubMed ID: 15454408
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
    Kertesz V; Connelly HM; Erickson BK; Hettich RL
    Anal Chem; 2009 Oct; 81(20):8387-95. PubMed ID: 19775152
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MSDash: mass spectrometry database and search.
    Wu Z; Lajoie G; Ma B
    Comput Syst Bioinformatics Conf; 2008; 7():63-71. PubMed ID: 19642269
    [TBL] [Abstract][Full Text] [Related]  

  • 19. pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.
    Li D; Fu Y; Sun R; Ling CX; Wei Y; Zhou H; Zeng R; Yang Q; He S; Gao W
    Bioinformatics; 2005 Jul; 21(13):3049-50. PubMed ID: 15817687
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mass analysis peptide sequence prediction (MAPSP).
    Eisenacher M; de Braaf J; König S
    Bioinformatics; 2006 Apr; 22(8):1002-3. PubMed ID: 16500935
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.