256 related articles for article (PubMed ID: 18428877)
1. Molecular modeling of nucleic acid structure: electrostatics and solvation.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Aug; Chapter 7():Unit 7.9. PubMed ID: 18428877
[TBL] [Abstract][Full Text] [Related]
2. Molecular modeling of nucleic Acid structure: electrostatics and solvation.
Bergonzo C; Galindo-Murillo R; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2014 Dec; 55():7.9.1-27. PubMed ID: 25631536
[TBL] [Abstract][Full Text] [Related]
3. Molecular modeling of nucleic acid structure: energy and sampling.
Bergonzo C; Galindo-Murillo R; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2013 Oct; 54():7.8.1-7.8.21. PubMed ID: 24510800
[TBL] [Abstract][Full Text] [Related]
4. Molecular modeling of nucleic acid structure.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Nov; Chapter 7():Unit 7.5. PubMed ID: 18428873
[TBL] [Abstract][Full Text] [Related]
5. Molecular modeling of nucleic acid structure.
Galindo-Murillo R; Bergonzo C; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2013 Oct; 54():7.5.1-7.5.13. PubMed ID: 24510799
[TBL] [Abstract][Full Text] [Related]
6. Nucleic acid solvation: from outside to insight.
Auffinger P; Hashem Y
Curr Opin Struct Biol; 2007 Jun; 17(3):325-33. PubMed ID: 17574833
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulation of nucleic acids: successes, limitations, and promise.
Cheatham TE; Young MA
Biopolymers; 2000-2001; 56(4):232-56. PubMed ID: 11754338
[TBL] [Abstract][Full Text] [Related]
8. Molecular modeling of nucleic acid structure: setup and analysis.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Nov; Chapter 7():Unit 7.10. PubMed ID: 18428869
[TBL] [Abstract][Full Text] [Related]
9. Biomolecular electrostatics and solvation: a computational perspective.
Ren P; Chun J; Thomas DG; Schnieders MJ; Marucho M; Zhang J; Baker NA
Q Rev Biophys; 2012 Nov; 45(4):427-91. PubMed ID: 23217364
[TBL] [Abstract][Full Text] [Related]
10. Molecular modeling of nucleic Acid structure: setup and analysis.
Galindo-Murillo R; Bergonzo C; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2014 Mar; 56():7.10.1-21. PubMed ID: 25606980
[TBL] [Abstract][Full Text] [Related]
11. Molecular modeling of nucleic acid structure: energy and sampling.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 May; Chapter 7():Unit 7.8. PubMed ID: 18428876
[TBL] [Abstract][Full Text] [Related]
12. Molecular dynamics applied to nucleic acids.
Norberg J; Nilsson L
Acc Chem Res; 2002 Jun; 35(6):465-72. PubMed ID: 12069632
[TBL] [Abstract][Full Text] [Related]
13. Generalized Born Implicit Solvent Models for Biomolecules.
Onufriev AV; Case DA
Annu Rev Biophys; 2019 May; 48():275-296. PubMed ID: 30857399
[TBL] [Abstract][Full Text] [Related]
14. Comparison of mode analyses at different resolutions applied to nucleic acid systems.
Van Wynsberghe AW; Cui Q
Biophys J; 2005 Nov; 89(5):2939-49. PubMed ID: 16100266
[TBL] [Abstract][Full Text] [Related]
15. Solvation forces on biomolecular structures: a comparison of explicit solvent and Poisson-Boltzmann models.
Wagoner J; Baker NA
J Comput Chem; 2004 Oct; 25(13):1623-9. PubMed ID: 15264256
[TBL] [Abstract][Full Text] [Related]
16. Generalized born models of macromolecular solvation effects.
Bashford D; Case DA
Annu Rev Phys Chem; 2000; 51():129-52. PubMed ID: 11031278
[TBL] [Abstract][Full Text] [Related]
17. Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations.
Sponer J; Berger I; Spačková N; Leszczynski J; Hobza P
J Biomol Struct Dyn; 2000; 17 Suppl 1():1-24. PubMed ID: 22607400
[TBL] [Abstract][Full Text] [Related]
18. Peptide and protein folding and conformational equilibria: theoretical treatment of electrostatics and hydrogen bonding with implicit solvent models.
Im W; Chen J; Brooks CL
Adv Protein Chem; 2005; 72():173-98. PubMed ID: 16581377
[TBL] [Abstract][Full Text] [Related]
19. PNA-nucleic acid complexes. Structure, stability and dynamics.
Eriksson M; Nielsen PE
Q Rev Biophys; 1996 Dec; 29(4):369-94. PubMed ID: 9080548
[No Abstract] [Full Text] [Related]
20. Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment.
Sim AYL
Adv Colloid Interface Sci; 2016 Jun; 232():49-56. PubMed ID: 26482088
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]