These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
8. Partitioning of minimotifs based on function with improved prediction accuracy. Rajasekaran S; Mi T; Merlin JC; Oommen A; Gradie P; Schiller MR PLoS One; 2010 Aug; 5(8):e12276. PubMed ID: 20808856 [TBL] [Abstract][Full Text] [Related]
9. Minimotif Miner 4: a million peptide minimotifs and counting. Lyon KF; Cai X; Young RJ; Mamun AA; Rajasekaran S; Schiller MR Nucleic Acids Res; 2018 Jan; 46(D1):D465-D470. PubMed ID: 29140456 [TBL] [Abstract][Full Text] [Related]
10. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets. La D; Livesay DR BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082 [TBL] [Abstract][Full Text] [Related]
11. Improving position-specific predictions of protein functional sites using phylogenetic motifs. Dukka BK; Livesay DR Bioinformatics; 2008 Oct; 24(20):2308-16. PubMed ID: 18723520 [TBL] [Abstract][Full Text] [Related]
12. The SLiMDisc server: short, linear motif discovery in proteins. Davey NE; Edwards RJ; Shields DC Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W455-9. PubMed ID: 17576682 [TBL] [Abstract][Full Text] [Related]
13. SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks. Olorin E; O'Brien KT; Palopoli N; Pérez-Bercoff Å; Shields DC; Edwards RJ F1000Res; 2015; 4():477. PubMed ID: 26674271 [TBL] [Abstract][Full Text] [Related]
14. Automatic annotation of protein motif function with Gene Ontology terms. Lu X; Zhai C; Gopalakrishnan V; Buchanan BG BMC Bioinformatics; 2004 Sep; 5():122. PubMed ID: 15345032 [TBL] [Abstract][Full Text] [Related]
15. SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent. Davey NE; Shields DC; Edwards RJ Nucleic Acids Res; 2006; 34(12):3546-54. PubMed ID: 16855291 [TBL] [Abstract][Full Text] [Related]
16. MINER: software for phylogenetic motif identification. La D; Livesay DR Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W267-70. PubMed ID: 15980467 [TBL] [Abstract][Full Text] [Related]
17. APD: the Antimicrobial Peptide Database. Wang Z; Wang G Nucleic Acids Res; 2004 Jan; 32(Database issue):D590-2. PubMed ID: 14681488 [TBL] [Abstract][Full Text] [Related]
18. QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. Gutman R; Berezin C; Wollman R; Rosenberg Y; Ben-Tal N Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W255-61. PubMed ID: 15980465 [TBL] [Abstract][Full Text] [Related]
19. Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. Cheng G; Qian B; Samudrala R; Baker D Nucleic Acids Res; 2005; 33(18):5861-7. PubMed ID: 16224101 [TBL] [Abstract][Full Text] [Related]
20. Combining evolutionary and structural information for local protein structure prediction. Pei J; Grishin NV Proteins; 2004 Sep; 56(4):782-94. PubMed ID: 15281130 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]