These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

252 related articles for article (PubMed ID: 18442401)

  • 21. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J; Giegerich R
    Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A max-margin model for efficient simultaneous alignment and folding of RNA sequences.
    Do CB; Foo CS; Batzoglou S
    Bioinformatics; 2008 Jul; 24(13):i68-76. PubMed ID: 18586747
    [TBL] [Abstract][Full Text] [Related]  

  • 23. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 24. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
    Sato K; Kato Y; Akutsu T; Asai K; Sakakibara Y
    Bioinformatics; 2012 Dec; 28(24):3218-24. PubMed ID: 23060618
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Measuring covariation in RNA alignments: physical realism improves information measures.
    Lindgreen S; Gardner PP; Krogh A
    Bioinformatics; 2006 Dec; 22(24):2988-95. PubMed ID: 17038338
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PROMALS3D: a tool for multiple protein sequence and structure alignments.
    Pei J; Kim BH; Grishin NV
    Nucleic Acids Res; 2008 Apr; 36(7):2295-300. PubMed ID: 18287115
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
    Bellamy-Royds AB; Turcotte M
    BMC Bioinformatics; 2007 Jun; 8():190. PubMed ID: 17559658
    [TBL] [Abstract][Full Text] [Related]  

  • 28. NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.
    Rose D; Hertel J; Reiche K; Stadler PF; Hackermüller J
    Genomics; 2008 Jul; 92(1):65-74. PubMed ID: 18511233
    [TBL] [Abstract][Full Text] [Related]  

  • 29. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
    Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
    Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Strategies for measuring evolutionary conservation of RNA secondary structures.
    Gruber AR; Bernhart SH; Hofacker IL; Washietl S
    BMC Bioinformatics; 2008 Feb; 9():122. PubMed ID: 18302738
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.
    Matveeva OV; Foley BT; Nemtsov VA; Gesteland RF; Matsufuji S; Atkins JF; Ogurtsov AY; Shabalina SA
    BMC Bioinformatics; 2004 Apr; 5():44. PubMed ID: 15115544
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 34. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X; Ji Y; Stormo GD
    Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
    Katoh K; Toh H
    BMC Bioinformatics; 2008 Apr; 9():212. PubMed ID: 18439255
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
    Kemena C; Bussotti G; Capriotti E; Marti-Renom MA; Notredame C
    Bioinformatics; 2013 May; 29(9):1112-9. PubMed ID: 23449094
    [TBL] [Abstract][Full Text] [Related]  

  • 37. ddbRNA: detection of conserved secondary structures in multiple alignments.
    di Bernardo D; Down T; Hubbard T
    Bioinformatics; 2003 Sep; 19(13):1606-11. PubMed ID: 12967955
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Identifying structural noncoding RNAs using RNAz.
    Washietl S; Hofacker IL
    Curr Protoc Bioinformatics; 2007 Sep; Chapter 12():Unit 12.7. PubMed ID: 18428784
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Multiple RNA structure alignment.
    Wang Z; Zhang K
    J Bioinform Comput Biol; 2005 Jun; 3(3):609-26. PubMed ID: 16108086
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.