267 related articles for article (PubMed ID: 18446288)
1. Implicit membrane models for membrane protein simulation.
Feig M
Methods Mol Biol; 2008; 443():181-96. PubMed ID: 18446288
[TBL] [Abstract][Full Text] [Related]
2. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
Vorobjev YN; Almagro JC; Hermans J
Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
[TBL] [Abstract][Full Text] [Related]
3. Implicit modeling of nonpolar solvation for simulating protein folding and conformational transitions.
Chen J; Brooks CL
Phys Chem Chem Phys; 2008 Jan; 10(4):471-81. PubMed ID: 18183310
[TBL] [Abstract][Full Text] [Related]
4. Sampling efficiency in explicit and implicit membrane environments studied by peptide folding simulations.
Ulmschneider JP; Ulmschneider MB
Proteins; 2009 May; 75(3):586-97. PubMed ID: 19003985
[TBL] [Abstract][Full Text] [Related]
5. Implicit solvent simulations of DNA and DNA-protein complexes: agreement with explicit solvent vs experiment.
Chocholousová J; Feig M
J Phys Chem B; 2006 Aug; 110(34):17240-51. PubMed ID: 16928023
[TBL] [Abstract][Full Text] [Related]
6. Recent advances in the development and application of implicit solvent models in biomolecule simulations.
Feig M; Brooks CL
Curr Opin Struct Biol; 2004 Apr; 14(2):217-24. PubMed ID: 15093837
[TBL] [Abstract][Full Text] [Related]
7. On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute-solvent interaction energy.
Levy RM; Zhang LY; Gallicchio E; Felts AK
J Am Chem Soc; 2003 Aug; 125(31):9523-30. PubMed ID: 12889983
[TBL] [Abstract][Full Text] [Related]
8. FACTS: Fast analytical continuum treatment of solvation.
Haberthür U; Caflisch A
J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
[TBL] [Abstract][Full Text] [Related]
9. Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model.
Tanizaki S; Feig M
J Phys Chem B; 2006 Jan; 110(1):548-56. PubMed ID: 16471567
[TBL] [Abstract][Full Text] [Related]
10. Monte Carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane.
Ulmschneider JP; Ulmschneider MB; Di Nola A
Proteins; 2007 Nov; 69(2):297-308. PubMed ID: 17600830
[TBL] [Abstract][Full Text] [Related]
11. A generalized Born formalism for heterogeneous dielectric environments: application to the implicit modeling of biological membranes.
Tanizaki S; Feig M
J Chem Phys; 2005 Mar; 122(12):124706. PubMed ID: 15836408
[TBL] [Abstract][Full Text] [Related]
12. Comparison of implicit solvent models for the simulation of protein-surface interactions.
Sun Y; Latour RA
J Comput Chem; 2006 Dec; 27(16):1908-22. PubMed ID: 17019723
[TBL] [Abstract][Full Text] [Related]
13. Modeling loop reorganization free energies of acetylcholinesterase: a comparison of explicit and implicit solvent models.
Olson MA
Proteins; 2004 Dec; 57(4):645-50. PubMed ID: 15481087
[TBL] [Abstract][Full Text] [Related]
14. Implicit solvation based on generalized Born theory in different dielectric environments.
Feig M; Im W; Brooks CL
J Chem Phys; 2004 Jan; 120(2):903-11. PubMed ID: 15267926
[TBL] [Abstract][Full Text] [Related]
15. Proton binding to proteins: pK(a) calculations with explicit and implicit solvent models.
Simonson T; Carlsson J; Case DA
J Am Chem Soc; 2004 Apr; 126(13):4167-80. PubMed ID: 15053606
[TBL] [Abstract][Full Text] [Related]
16. Implicit nonpolar solvent models.
Tan C; Tan YH; Luo R
J Phys Chem B; 2007 Oct; 111(42):12263-74. PubMed ID: 17918880
[TBL] [Abstract][Full Text] [Related]
17. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
Yeh IC; Lee MS; Olson MA
J Phys Chem B; 2008 Nov; 112(47):15064-73. PubMed ID: 18959439
[TBL] [Abstract][Full Text] [Related]
18. Comparison of various implicit solvent models in molecular dynamics simulations of immunoglobulin G light chain dimer.
Król M
J Comput Chem; 2003 Apr; 24(5):531-46. PubMed ID: 12632469
[TBL] [Abstract][Full Text] [Related]
19. Implicit solvent simulations of peptide interactions with anionic lipid membranes.
Lazaridis T
Proteins; 2005 Feb; 58(3):518-27. PubMed ID: 15609352
[TBL] [Abstract][Full Text] [Related]
20. Coupling nonpolar and polar solvation free energies in implicit solvent models.
Dzubiella J; Swanson JM; McCammon JA
J Chem Phys; 2006 Feb; 124(8):084905. PubMed ID: 16512740
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
