These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
200 related articles for article (PubMed ID: 18452949)
21. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. Najmanovich R; Kurbatova N; Thornton J Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810 [TBL] [Abstract][Full Text] [Related]
22. Designed nucleotide binding motifs. Kröner C; Röthlingshöfer M; Richert C J Org Chem; 2011 Apr; 76(8):2933-6. PubMed ID: 21413744 [TBL] [Abstract][Full Text] [Related]
23. Predicting Small Molecule Binding Nucleotides in RNA Structures Using RNA Surface Topography. Gao J; Liu H; Zhuo C; Zeng C; Zhao Y J Chem Inf Model; 2024 Sep; 64(18):6979-6992. PubMed ID: 39230508 [TBL] [Abstract][Full Text] [Related]
24. Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Antson AA; Dodson EJ; Dodson G; Greaves RB; Chen X; Gollnick P Nature; 1999 Sep; 401(6750):235-42. PubMed ID: 10499579 [TBL] [Abstract][Full Text] [Related]
25. Structure-templated predictions of novel protein interactions from sequence information. Betel D; Breitkreuz KE; Isserlin R; Dewar-Darch D; Tyers M; Hogue CW PLoS Comput Biol; 2007 Sep; 3(9):1783-9. PubMed ID: 17892321 [TBL] [Abstract][Full Text] [Related]
26. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311 [TBL] [Abstract][Full Text] [Related]
27. Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps. Kailasam S; Bhattacharyya D; Bansal M BMC Res Notes; 2014 Feb; 7():83. PubMed ID: 24502340 [TBL] [Abstract][Full Text] [Related]
28. Computational analysis of hydrogen bonds in protein-RNA complexes for interaction patterns. Kim H; Jeong E; Lee SW; Han K FEBS Lett; 2003 Sep; 552(2-3):231-9. PubMed ID: 14527692 [TBL] [Abstract][Full Text] [Related]
29. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. Reinharz V; Major F; Waldispühl J Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763 [TBL] [Abstract][Full Text] [Related]
30. Dynamic programming algorithms for RNA structure prediction with binding sites. Poolsap U; Kato Y; Akutsu T Pac Symp Biocomput; 2010; ():98-107. PubMed ID: 19908362 [TBL] [Abstract][Full Text] [Related]
31. Structure-based prediction of DNA target sites by regulatory proteins. Kono H; Sarai A Proteins; 1999 Apr; 35(1):114-31. PubMed ID: 10090291 [TBL] [Abstract][Full Text] [Related]
32. Direct identification of base-paired RNA nucleotides by correlated chemical probing. Krokhotin A; Mustoe AM; Weeks KM; Dokholyan NV RNA; 2017 Jan; 23(1):6-13. PubMed ID: 27803152 [TBL] [Abstract][Full Text] [Related]
33. Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii. Tishchenko S; Nikulin A; Fomenkova N; Nevskaya N; Nikonov O; Dumas P; Moine H; Ehresmann B; Ehresmann C; Piendl W; Lamzin V; Garber M; Nikonov S J Mol Biol; 2001 Aug; 311(2):311-24. PubMed ID: 11478863 [TBL] [Abstract][Full Text] [Related]
34. The role of RNA sequence and structure in RNA--protein interactions. Gupta A; Gribskov M J Mol Biol; 2011 Jun; 409(4):574-87. PubMed ID: 21514302 [TBL] [Abstract][Full Text] [Related]
35. Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations? Svozil D; Hobza P; Sponer J J Phys Chem B; 2010 Jan; 114(2):1191-203. PubMed ID: 20000584 [TBL] [Abstract][Full Text] [Related]
37. Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs. Chawla M; Chermak E; Zhang Q; Bujnicki JM; Oliva R; Cavallo L Nucleic Acids Res; 2017 Nov; 45(19):11019-11032. PubMed ID: 28977572 [TBL] [Abstract][Full Text] [Related]
38. Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15. Serganov A; Bénard L; Portier C; Ennifar E; Garber M; Ehresmann B; Ehresmann C J Mol Biol; 2001 Jan; 305(4):785-803. PubMed ID: 11162092 [TBL] [Abstract][Full Text] [Related]
39. Discovering the interaction propensities of amino acids and nucleotides from protein-RNA complexes. Jeong E; Kim H; Lee SW; Han K Mol Cells; 2003 Oct; 16(2):161-7. PubMed ID: 14651256 [TBL] [Abstract][Full Text] [Related]
40. Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites. Sun X; Wartell RM Biochemistry; 2006 Apr; 45(15):4875-87. PubMed ID: 16605255 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]