BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

484 related articles for article (PubMed ID: 18474507)

  • 1. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
    Viklund H; Elofsson A
    Bioinformatics; 2008 Aug; 24(15):1662-8. PubMed ID: 18474507
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Granseth E; Viklund H; Elofsson A
    Bioinformatics; 2006 Jul; 22(14):e191-6. PubMed ID: 16873471
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improving the accuracy of transmembrane protein topology prediction using evolutionary information.
    Jones DT
    Bioinformatics; 2007 Mar; 23(5):538-44. PubMed ID: 17237066
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.
    Kahsay RY; Gao G; Liao L
    Bioinformatics; 2005 May; 21(9):1853-8. PubMed ID: 15691854
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Prediction of the burial status of transmembrane residues of helical membrane proteins.
    Park Y; Hayat S; Helms V
    BMC Bioinformatics; 2007 Aug; 8():302. PubMed ID: 17708758
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
    Peng HP; Yang AS
    Bioinformatics; 2007 Nov; 23(21):2836-42. PubMed ID: 17827204
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
    Song J; Yuan Z; Tan H; Huber T; Burrage K
    Bioinformatics; 2007 Dec; 23(23):3147-54. PubMed ID: 17942444
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SVMtm: support vector machines to predict transmembrane segments.
    Yuan Z; Mattick JS; Teasdale RD
    J Comput Chem; 2004 Apr; 25(5):632-6. PubMed ID: 14978706
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
    Beuming T; Weinstein H
    Bioinformatics; 2004 Aug; 20(12):1822-35. PubMed ID: 14988128
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
    Viklund H; Bernsel A; Skwark M; Elofsson A
    Bioinformatics; 2008 Dec; 24(24):2928-9. PubMed ID: 18945683
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops.
    Lasso G; Antoniw JF; Mullins JG
    Bioinformatics; 2006 Jul; 22(14):e290-7. PubMed ID: 16873484
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rediscovering secondary structures as network motifs--an unsupervised learning approach.
    Raveh B; Rahat O; Basri R; Schreiber G
    Bioinformatics; 2007 Jan; 23(2):e163-9. PubMed ID: 17237086
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A neural-network-based method for predicting protein stability changes upon single point mutations.
    Capriotti E; Fariselli P; Casadio R
    Bioinformatics; 2004 Aug; 20 Suppl 1():i63-8. PubMed ID: 15262782
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ensemble classifier for protein fold pattern recognition.
    Shen HB; Chou KC
    Bioinformatics; 2006 Jul; 22(14):1717-22. PubMed ID: 16672258
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.
    Natt NK; Kaur H; Raghava GP
    Proteins; 2004 Jul; 56(1):11-8. PubMed ID: 15162482
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformational analysis of alternative protein structures.
    Domingues FS; Rahnenführer J; Lengauer T
    Bioinformatics; 2007 Dec; 23(23):3131-8. PubMed ID: 17933849
    [TBL] [Abstract][Full Text] [Related]  

  • 18. POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.
    Hirose S; Shimizu K; Kanai S; Kuroda Y; Noguchi T
    Bioinformatics; 2007 Aug; 23(16):2046-53. PubMed ID: 17545177
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Predicting protein stability changes from sequences using support vector machines.
    Capriotti E; Fariselli P; Calabrese R; Casadio R
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii54-8. PubMed ID: 16204125
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types.
    Shen H; Chou KC
    Biochem Biophys Res Commun; 2005 Aug; 334(1):288-92. PubMed ID: 16002049
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.