241 related articles for article (PubMed ID: 18477638)
1. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Mitra S; Shcherbakova IV; Altman RB; Brenowitz M; Laederach A
Nucleic Acids Res; 2008 Jun; 36(11):e63. PubMed ID: 18477638
[TBL] [Abstract][Full Text] [Related]
2. Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions.
Takamoto K; Chance MR; Brenowitz M
Nucleic Acids Res; 2004 Aug; 32(15):E119. PubMed ID: 15319447
[TBL] [Abstract][Full Text] [Related]
3. Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".
Brenowitz M; Chance MR; Dhavan G; Takamoto K
Curr Opin Struct Biol; 2002 Oct; 12(5):648-53. PubMed ID: 12464318
[TBL] [Abstract][Full Text] [Related]
4. A recommended workflow for DNase I footprinting using a capillary electrophoresis genetic analyzer.
Sivapragasam S; Pande A; Grove A
Anal Biochem; 2015 Jul; 481():1-3. PubMed ID: 25908559
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of the information content of RNA structure mapping data for secondary structure prediction.
Quarrier S; Martin JS; Davis-Neulander L; Beauregard A; Laederach A
RNA; 2010 Jun; 16(6):1108-17. PubMed ID: 20413617
[TBL] [Abstract][Full Text] [Related]
6. Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins.
Shcherbakova I; Mitra S; Beer RH; Brenowitz M
Nucleic Acids Res; 2006 Mar; 34(6):e48. PubMed ID: 16582097
[TBL] [Abstract][Full Text] [Related]
7. Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Laederach A; Das R; Vicens Q; Pearlman SM; Brenowitz M; Herschlag D; Altman RB
Nat Protoc; 2008; 3(9):1395-401. PubMed ID: 18772866
[TBL] [Abstract][Full Text] [Related]
8. Mapping small DNA ligand hydroxyl radical footprinting and affinity cleavage products for capillary electrophoresis.
He G; Vasilieva E; Bashkin JK; Dupureur CM
Anal Biochem; 2013 Aug; 439(2):99-101. PubMed ID: 23608054
[TBL] [Abstract][Full Text] [Related]
9. Nonradiochemical DNase I footprinting by capillary electrophoresis.
Wilson DO; Johnson P; McCord BR
Electrophoresis; 2001 Jun; 22(10):1979-86. PubMed ID: 11465496
[TBL] [Abstract][Full Text] [Related]
10. ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.
Vasa SM; Guex N; Wilkinson KA; Weeks KM; Giddings MC
RNA; 2008 Oct; 14(10):1979-90. PubMed ID: 18772246
[TBL] [Abstract][Full Text] [Related]
11. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.
Shaytan AK; Xiao H; Armeev GA; Gaykalova DA; Komarova GA; Wu C; Studitsky VM; Landsman D; Panchenko AR
Nat Protoc; 2018 Nov; 13(11):2535-2556. PubMed ID: 30341436
[TBL] [Abstract][Full Text] [Related]
12. Footprinting with an automated capillary DNA sequencer.
Yindeeyoungyeon W; Schell MA
Biotechniques; 2000 Nov; 29(5):1034-6, 1038, 1040-1. PubMed ID: 11084866
[TBL] [Abstract][Full Text] [Related]
13. RNA secondary structure prediction using high-throughput SHAPE.
Lusvarghi S; Sztuba-Solinska J; Purzycka KJ; Rausch JW; Le Grice SF
J Vis Exp; 2013 May; (75):e50243. PubMed ID: 23748604
[TBL] [Abstract][Full Text] [Related]
14. Use of Nonradiochemical DNAse Footprinting to Analyze c-di-GMP Modulation of DNA-Binding Proteins.
Baraquet C; Harwood CS
Methods Mol Biol; 2017; 1657():303-315. PubMed ID: 28889304
[TBL] [Abstract][Full Text] [Related]
15. Analysis of computational footprinting methods for DNase sequencing experiments.
Gusmao EG; Allhoff M; Zenke M; Costa IG
Nat Methods; 2016 Apr; 13(4):303-9. PubMed ID: 26901649
[TBL] [Abstract][Full Text] [Related]
16. The Beamline X28C of the Center for Synchrotron Biosciences: a national resource for biomolecular structure and dynamics experiments using synchrotron footprinting.
Gupta S; Sullivan M; Toomey J; Kiselar J; Chance MR
J Synchrotron Radiat; 2007 May; 14(Pt 3):233-43. PubMed ID: 17435298
[TBL] [Abstract][Full Text] [Related]
17. Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting.
Shcherbakova I; Brenowitz M
Nat Protoc; 2008; 3(2):288-302. PubMed ID: 18274531
[TBL] [Abstract][Full Text] [Related]
18. Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.
Lee S; Kim H; Tian S; Lee T; Yoon S; Das R
Bioinformatics; 2015 Sep; 31(17):2808-15. PubMed ID: 25943472
[TBL] [Abstract][Full Text] [Related]
19. Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches.
Petri V; Brenowitz M
Curr Opin Biotechnol; 1997 Feb; 8(1):36-44. PubMed ID: 9013649
[TBL] [Abstract][Full Text] [Related]
20. Footprinting protein-DNA complexes using the hydroxyl radical.
Jain SS; Tullius TD
Nat Protoc; 2008; 3(6):1092-1100. PubMed ID: 18546600
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
