223 related articles for article (PubMed ID: 18502771)
1. Spatial and temporal heterogeneity in nucleotide sequence evolution.
Whelan S
Mol Biol Evol; 2008 Aug; 25(8):1683-94. PubMed ID: 18502771
[TBL] [Abstract][Full Text] [Related]
2. Dynamically heterogenous partitions and phylogenetic inference: an evaluation of analytical strategies with cytochrome b and ND6 gene sequences in cranes.
Krajewski C; Fain MG; Buckley L; King DG
Mol Phylogenet Evol; 1999 Nov; 13(2):302-13. PubMed ID: 10603258
[TBL] [Abstract][Full Text] [Related]
3. The genetic code can cause systematic bias in simple phylogenetic models.
Whelan S
Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4003-11. PubMed ID: 18852102
[TBL] [Abstract][Full Text] [Related]
4. Reconstruction of ancestral nucleotide sequences and estimation of substitution frequencies in a star phylogeny.
Arndt PF
Gene; 2007 Apr; 390(1-2):75-83. PubMed ID: 17223282
[TBL] [Abstract][Full Text] [Related]
5. Parallel rate heterogeneity in chloroplast and mitochondrial genomes of Brazil nut trees (Lecythidaceae) is consistent with lineage effects.
Soria-Hernanz DF; Braverman JM; Hamilton MB
Mol Biol Evol; 2008 Jul; 25(7):1282-96. PubMed ID: 18385219
[TBL] [Abstract][Full Text] [Related]
6. On the correlation between composition and site-specific evolutionary rate: implications for phylogenetic inference.
Gowri-Shankar V; Rattray M
Mol Biol Evol; 2006 Feb; 23(2):352-64. PubMed ID: 16237207
[TBL] [Abstract][Full Text] [Related]
7. An evolutionary model for protein-coding regions with conserved RNA structure.
Pedersen JS; Forsberg R; Meyer IM; Hein J
Mol Biol Evol; 2004 Oct; 21(10):1913-22. PubMed ID: 15229291
[TBL] [Abstract][Full Text] [Related]
8. Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the good, the bad, and the ugly.
Ruano-Rubio V; Fares MA
Syst Biol; 2007 Feb; 56(1):68-82. PubMed ID: 17366138
[TBL] [Abstract][Full Text] [Related]
9. Multidimensional vector space representation for convergent evolution and molecular phylogeny.
Kitazoe Y; Kishino H; Okabayashi T; Watabe T; Nakajima N; Okuhara Y; Kurihara Y
Mol Biol Evol; 2005 Mar; 22(3):704-15. PubMed ID: 15548750
[TBL] [Abstract][Full Text] [Related]
10. Accounting for gene rate heterogeneity in phylogenetic inference.
Bevan RB; Bryant D; Lang BF
Syst Biol; 2007 Apr; 56(2):194-205. PubMed ID: 17464878
[TBL] [Abstract][Full Text] [Related]
11. Evolutionary model selection with a genetic algorithm: a case study using stem RNA.
Kosakovsky Pond SL; Mannino FV; Gravenor MB; Muse SV; Frost SD
Mol Biol Evol; 2007 Jan; 24(1):159-70. PubMed ID: 17038448
[TBL] [Abstract][Full Text] [Related]
12. A dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests.
Zhou Y; Brinkmann H; Rodrigue N; Lartillot N; Philippe H
Mol Biol Evol; 2010 Feb; 27(2):371-84. PubMed ID: 19822637
[TBL] [Abstract][Full Text] [Related]
13. Measuring the fit of sequence data to phylogenetic model: allowing for missing data.
Waddell PJ
Mol Biol Evol; 2005 Mar; 22(3):395-401. PubMed ID: 15470228
[TBL] [Abstract][Full Text] [Related]
14. Sequence length bounds for resolving a deep phylogenetic divergence.
Fischer M; Steel M
J Theor Biol; 2009 Jan; 256(2):247-52. PubMed ID: 18955066
[TBL] [Abstract][Full Text] [Related]
15. A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.
Baele G; Van de Peer Y; Vansteelandt S
Syst Biol; 2008 Oct; 57(5):675-92. PubMed ID: 18853356
[TBL] [Abstract][Full Text] [Related]
16. In silico sequence evolution with site-specific interactions along phylogenetic trees.
Gesell T; von Haeseler A
Bioinformatics; 2006 Mar; 22(6):716-22. PubMed ID: 16332711
[TBL] [Abstract][Full Text] [Related]
17. A gamma mixture model better accounts for among site rate heterogeneity.
Mayrose I; Friedman N; Pupko T
Bioinformatics; 2005 Sep; 21 Suppl 2():ii151-8. PubMed ID: 16204095
[TBL] [Abstract][Full Text] [Related]
18. Testing for covarion-like evolution in protein sequences.
Wang HC; Spencer M; Susko E; Roger AJ
Mol Biol Evol; 2007 Jan; 24(1):294-305. PubMed ID: 17056642
[TBL] [Abstract][Full Text] [Related]
19. Phylogenetics by likelihood: evolutionary modeling as a tool for understanding the genome.
Kosiol C; Bofkin L; Whelan S
J Biomed Inform; 2006 Feb; 39(1):51-61. PubMed ID: 16226061
[TBL] [Abstract][Full Text] [Related]
20. Phylogenetic mixture models can reduce node-density artifacts.
Venditti C; Meade A; Pagel M
Syst Biol; 2008 Apr; 57(2):286-93. PubMed ID: 18432549
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]