370 related articles for article (PubMed ID: 18511233)
1. NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.
Rose D; Hertel J; Reiche K; Stadler PF; Hackermüller J
Genomics; 2008 Jul; 92(1):65-74. PubMed ID: 18511233
[TBL] [Abstract][Full Text] [Related]
2. Considerations in the identification of functional RNA structural elements in genomic alignments.
Babak T; Blencowe BJ; Hughes TR
BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
[TBL] [Abstract][Full Text] [Related]
3. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
4. RNA secondary structural alignment with conditional random fields.
Sato K; Sakakibara Y
Bioinformatics; 2005 Sep; 21 Suppl 2():ii237-42. PubMed ID: 16204111
[TBL] [Abstract][Full Text] [Related]
5. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
Uchiyama I; Higuchi T; Kobayashi I
BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
[TBL] [Abstract][Full Text] [Related]
6. PALMA: mRNA to genome alignments using large margin algorithms.
Schulze U; Hepp B; Ong CS; Rätsch G
Bioinformatics; 2007 Aug; 23(15):1892-900. PubMed ID: 17537755
[TBL] [Abstract][Full Text] [Related]
7. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Havgaard JH; Lyngsø RB; Stormo GD; Gorodkin J
Bioinformatics; 2005 May; 21(9):1815-24. PubMed ID: 15657094
[TBL] [Abstract][Full Text] [Related]
8. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
Lindgreen S; Gardner PP; Krogh A
Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
[TBL] [Abstract][Full Text] [Related]
9. Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H; Tabei Y; Kin T; Asai K
Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
[TBL] [Abstract][Full Text] [Related]
10. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
[TBL] [Abstract][Full Text] [Related]
11. ABC: software for interactive browsing of genomic multiple sequence alignment data.
Cooper GM; Singaravelu SA; Sidow A
BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
[TBL] [Abstract][Full Text] [Related]
12. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
Kiryu H; Kin T; Asai K
Bioinformatics; 2007 Feb; 23(4):434-41. PubMed ID: 17182698
[TBL] [Abstract][Full Text] [Related]
13. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
14. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
Siddharthan R
BMC Bioinformatics; 2006 Mar; 7():143. PubMed ID: 16542424
[TBL] [Abstract][Full Text] [Related]
15. MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.
Kryukov K; Saitou N
BMC Bioinformatics; 2010 Mar; 11():142. PubMed ID: 20298584
[TBL] [Abstract][Full Text] [Related]
16. Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data.
Hertel J; Stadler PF
Bioinformatics; 2006 Jul; 22(14):e197-202. PubMed ID: 16873472
[TBL] [Abstract][Full Text] [Related]
17. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
[TBL] [Abstract][Full Text] [Related]
18. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
[TBL] [Abstract][Full Text] [Related]
19. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
Tabei Y; Tsuda K; Kin T; Asai K
Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
[TBL] [Abstract][Full Text] [Related]
20. SnoReport: computational identification of snoRNAs with unknown targets.
Hertel J; Hofacker IL; Stadler PF
Bioinformatics; 2008 Jan; 24(2):158-64. PubMed ID: 17895272
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
