These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 18515348)

  • 1. MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.
    Fontaine A; de Monte A; Touzet H
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W14-8. PubMed ID: 18515348
    [TBL] [Abstract][Full Text] [Related]  

  • 2. R-Coffee: a method for multiple alignment of non-coding RNA.
    Wilm A; Higgins DG; Notredame C
    Nucleic Acids Res; 2008 May; 36(9):e52. PubMed ID: 18420654
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 4. WAR: Webserver for aligning structural RNAs.
    Torarinsson E; Lindgreen S
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W79-84. PubMed ID: 18492721
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Software.ncrna.org: web servers for analyses of RNA sequences.
    Asai K; Kiryu H; Hamada M; Tabei Y; Sato K; Matsui H; Sakakibara Y; Terai G; Mituyama T
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W75-8. PubMed ID: 18440970
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.
    Chikkagoudar S; Livesay DR; Roshan U
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W59-63. PubMed ID: 20522510
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 8. R-Coffee: a web server for accurately aligning noncoding RNA sequences.
    Moretti S; Wilm A; Higgins DG; Xenarios I; Notredame C
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W10-3. PubMed ID: 18483080
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A benchmark of multiple sequence alignment programs upon structural RNAs.
    Gardner PP; Wilm A; Washietl S
    Nucleic Acids Res; 2005; 33(8):2433-9. PubMed ID: 15860779
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNAz 2.0: improved noncoding RNA detection.
    Gruber AR; Findeiß S; Washietl S; Hofacker IL; Stadler PF
    Pac Symp Biocomput; 2010; ():69-79. PubMed ID: 19908359
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural analysis of aligned RNAs.
    Voss B
    Nucleic Acids Res; 2006; 34(19):5471-81. PubMed ID: 17020924
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ARTS: alignment of RNA tertiary structures.
    Dror O; Nussinov R; Wolfson H
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S; Gardner PP; Krogh A
    Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach.
    Sahraeian SM; Yoon BJ
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S38. PubMed ID: 21342569
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RILogo: visualizing RNA-RNA interactions.
    Menzel P; Seemann SE; Gorodkin J
    Bioinformatics; 2012 Oct; 28(19):2523-6. PubMed ID: 22826541
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency.
    Wright ES
    RNA; 2020 May; 26(5):531-540. PubMed ID: 32005745
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.
    Seemann SE; Richter AS; Gesell T; Backofen R; Gorodkin J
    Bioinformatics; 2011 Jan; 27(2):211-9. PubMed ID: 21088024
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identifying structural noncoding RNAs using RNAz.
    Washietl S; Hofacker IL
    Curr Protoc Bioinformatics; 2007 Sep; Chapter 12():Unit 12.7. PubMed ID: 18428784
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pairwise RNA secondary structure alignment with conserved stem pattern.
    Chiu JK; Chen YP
    Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.