These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 18524799)

  • 1. NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
    Brohée S; Faust K; Lima-Mendez G; Sand O; Janky R; Vanderstocken G; Deville Y; van Helden J
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W444-51. PubMed ID: 18524799
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using the NeAT toolbox to compare networks to networks, clusters to clusters, and network to clusters.
    Brohée S
    Methods Mol Biol; 2012; 804():327-42. PubMed ID: 22144162
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Network Analysis Tools: from biological networks to clusters and pathways.
    Brohée S; Faust K; Lima-Mendez G; Vanderstocken G; van Helden J
    Nat Protoc; 2008; 3(10):1616-29. PubMed ID: 18802442
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MADNet: microarray database network web server.
    Segota I; Bartonicek N; Vlahovicek K
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W332-5. PubMed ID: 18480121
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Graphle: Interactive exploration of large, dense graphs.
    Huttenhower C; Mehmood SO; Troyanskaya OG
    BMC Bioinformatics; 2009 Dec; 10():417. PubMed ID: 20003429
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Biosphere: the interoperation of web services in microarray cluster analysis.
    Cheung KH; de Knikker R; Guo Y; Zhong G; Hager J; Yip KY; Kwan AK; Li P; Cheung DW
    Appl Bioinformatics; 2004; 3(4):253-6. PubMed ID: 15702956
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PATIKAmad: putting microarray data into pathway context.
    Babur O; Colak R; Demir E; Dogrusoz U
    Proteomics; 2008 Jun; 8(11):2196-8. PubMed ID: 18452226
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
    Yip KY; Yu H; Kim PM; Schultz M; Gerstein M
    Bioinformatics; 2006 Dec; 22(23):2968-70. PubMed ID: 17021160
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MILANO--custom annotation of microarray results using automatic literature searches.
    Rubinstein R; Simon I
    BMC Bioinformatics; 2005 Jan; 6():12. PubMed ID: 15661078
    [TBL] [Abstract][Full Text] [Related]  

  • 10. VisANT: data-integrating visual framework for biological networks and modules.
    Hu Z; Mellor J; Wu J; Yamada T; Holloway D; Delisi C
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W352-7. PubMed ID: 15980487
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.
    Pandey R; Guru RK; Mount DW
    Bioinformatics; 2004 Sep; 20(13):2156-8. PubMed ID: 15145817
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks.
    Taylor A; Steinberg J; Andrews TS; Webber C
    Bioinformatics; 2015 Feb; 31(3):442-4. PubMed ID: 25319962
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.
    Chung HJ; Kim M; Park CH; Kim J; Kim JH
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W460-4. PubMed ID: 15215430
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RSAT: regulatory sequence analysis tools.
    Thomas-Chollier M; Sand O; Turatsinze JV; Janky R; Defrance M; Vervisch E; Brohée S; van Helden J
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W119-27. PubMed ID: 18495751
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of clustering algorithms for protein-protein interaction networks.
    Brohée S; van Helden J
    BMC Bioinformatics; 2006 Nov; 7():488. PubMed ID: 17087821
    [TBL] [Abstract][Full Text] [Related]  

  • 16. R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.
    Antonov AV; Schmidt EE; Dietmann S; Krestyaninova M; Hermjakob H
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W78-83. PubMed ID: 20519200
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detecting non-uniform clusters in large-scale interaction graphs.
    Levtov N; Amberkar S; Frenkel ZM; Kaderali L; Volkovich Z
    J Comput Biol; 2014 Feb; 21(2):173-83. PubMed ID: 24050498
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Algorithms for effective querying of compound graph-based pathway databases.
    Dogrusoz U; Cetintas A; Demir E; Babur O
    BMC Bioinformatics; 2009 Nov; 10():376. PubMed ID: 19917102
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
    Vlasblom J; Wu S; Pu S; Superina M; Liu G; Orsi C; Wodak SJ
    Bioinformatics; 2006 Sep; 22(17):2178-9. PubMed ID: 16921162
    [TBL] [Abstract][Full Text] [Related]  

  • 20. NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks.
    Theodosiou T; Efstathiou G; Papanikolaou N; Kyrpides NC; Bagos PG; Iliopoulos I; Pavlopoulos GA
    BMC Res Notes; 2017 Jul; 10(1):278. PubMed ID: 28705239
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.