111 related articles for article (PubMed ID: 18539128)
1. Capillary electrophoretic analysis of methylation status in CpG-rich regions by single-base extension of primers modified with N6-methoxy-2,6-diaminopurine.
Boyd VL; Zon G
Anal Biochem; 2008 Sep; 380(1):13-20. PubMed ID: 18539128
[TBL] [Abstract][Full Text] [Related]
2. Methylation-dependent fragment separation: direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA.
Boyd VL; Moody KI; Karger AE; Livak KJ; Zon G; Burns JW
Anal Biochem; 2006 Jul; 354(2):266-73. PubMed ID: 16725101
[TBL] [Abstract][Full Text] [Related]
3. Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.
Ranade SS; Chung CB; Zon G; Boyd VL
Anal Biochem; 2009 Jul; 390(2):126-35. PubMed ID: 19379703
[TBL] [Abstract][Full Text] [Related]
4. Methylation-dependent fragment separation: novel analysis of 5-methyl cytosine by capillary electrophoresis of amplified DNA using PCR incorporation of chemically modified dCTP.
Boyd VL; Moody KI; Karger AE; Livak KJ; Zon G; Burns JW
Nucleosides Nucleotides Nucleic Acids; 2007; 26(6-7):629-34. PubMed ID: 18066869
[TBL] [Abstract][Full Text] [Related]
5. Formamide as a denaturant for bisulfite conversion of genomic DNA: Bisulfite sequencing of the GSTPi and RARbeta2 genes of 43 formalin-fixed paraffin-embedded prostate cancer specimens.
Zon G; Barker MA; Kaur P; Groshen S; Jones LW; Imam SA; Boyd VL
Anal Biochem; 2009 Sep; 392(2):117-25. PubMed ID: 19505431
[TBL] [Abstract][Full Text] [Related]
6. Single nucleotide extension technology for quantitative site-specific evaluation of metC/C in GC-rich regions.
Kaminsky ZA; Assadzadeh A; Flanagan J; Petronis A
Nucleic Acids Res; 2005 Jun; 33(10):e95. PubMed ID: 15958788
[TBL] [Abstract][Full Text] [Related]
7. Methylation profiling using degenerated oligonucleotide primer-PCR specific for genome-wide amplification of bisulfite-modified DNA.
Yang WH; Wu JR; Wang TH; Au LC
Anal Biochem; 2007 Oct; 369(1):120-7. PubMed ID: 17663982
[TBL] [Abstract][Full Text] [Related]
8. Methylation SNaPshot: a method for the quantification of site-specific DNA methylation levels.
Kaminsky Z; Petronis A
Methods Mol Biol; 2009; 507():241-55. PubMed ID: 18987819
[TBL] [Abstract][Full Text] [Related]
9. Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome.
Zhao Z; Zhang F
Gene; 2006 Feb; 366(2):316-24. PubMed ID: 16314054
[TBL] [Abstract][Full Text] [Related]
10. Methylation-sensitive single-nucleotide primer extension (Ms-SNuPE) for quantitative measurement of DNA methylation.
Gonzalgo ML; Liang G
Nat Protoc; 2007; 2(8):1931-6. PubMed ID: 17703204
[TBL] [Abstract][Full Text] [Related]
11. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.
Srivastava GP; Guo J; Shi H; Xu D
Bioinformatics; 2008 Sep; 24(17):1837-42. PubMed ID: 18579568
[TBL] [Abstract][Full Text] [Related]
12. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
Zhang Y; Rohde C; Tierling S; Stamerjohanns H; Reinhardt R; Walter J; Jeltsch A
Methods Mol Biol; 2009; 507():177-87. PubMed ID: 18987815
[TBL] [Abstract][Full Text] [Related]
13. CpG mutation rates in the human genome are highly dependent on local GC content.
Fryxell KJ; Moon WJ
Mol Biol Evol; 2005 Mar; 22(3):650-8. PubMed ID: 15537806
[TBL] [Abstract][Full Text] [Related]
14. Sequence context analysis in the mouse genome: single nucleotide polymorphisms and CpG island sequences.
Zhao Z; Zhang F
Genomics; 2006 Jan; 87(1):68-74. PubMed ID: 16316740
[TBL] [Abstract][Full Text] [Related]
15. Microarray-based method to analyze methylation status of E-cadherin gene in leukemia.
Zheng W; Wang Y; Luo J; Zhang F; Chen B; Lu Z
Clin Chim Acta; 2008 Jan; 387(1-2):97-104. PubMed ID: 17964562
[TBL] [Abstract][Full Text] [Related]
16. MethylQuant: a real-time PCR-based method to quantify DNA methylation at single specific cytosines.
Dugast-Darzacq C; Grange T
Methods Mol Biol; 2009; 507():281-303. PubMed ID: 18987822
[TBL] [Abstract][Full Text] [Related]
17. Evaluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis.
Uhlmann K; Brinckmann A; Toliat MR; Ritter H; Nürnberg P
Electrophoresis; 2002 Dec; 23(24):4072-9. PubMed ID: 12481262
[TBL] [Abstract][Full Text] [Related]
18. Determining the global DNA methylation status of rat according to the identifier repetitive elements.
Kim HH; Park JH; Jeong KS; Lee S
Electrophoresis; 2007 Nov; 28(21):3854-61. PubMed ID: 17960839
[TBL] [Abstract][Full Text] [Related]
19. Investigation of the methylation status around parent-of-origin detectable SNPs in imprinted genes.
Nakayashiki N; Takamiya M; Shimamoto K; Aoki Y; Hashiyada M
Forensic Sci Int Genet; 2009 Sep; 3(4):227-32. PubMed ID: 19647707
[TBL] [Abstract][Full Text] [Related]
20. Strand bias in complementary single-nucleotide polymorphisms of transcribed human sequences: evidence for functional effects of synonymous polymorphisms.
Qu HQ; Lawrence SG; Guo F; Majewski J; Polychronakos C
BMC Genomics; 2006 Aug; 7():213. PubMed ID: 16916449
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]