These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
43. RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules. Horesh Y; Doniger T; Michaeli S; Unger R BMC Bioinformatics; 2007 Oct; 8():366. PubMed ID: 17908318 [TBL] [Abstract][Full Text] [Related]
44. Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families. Barquist L; Burge SW; Gardner PP Curr Protoc Bioinformatics; 2016 Jun; 54():12.13.1-12.13.25. PubMed ID: 27322404 [TBL] [Abstract][Full Text] [Related]
45. An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type. Byun Y; Han K J Bioinform Comput Biol; 2016 Jun; 14(3):1650009. PubMed ID: 26932273 [TBL] [Abstract][Full Text] [Related]
46. Stochastic modeling of RNA pseudoknotted structures: a grammatical approach. Cai L; Malmberg RL; Wu Y Bioinformatics; 2003; 19 Suppl 1():i66-73. PubMed ID: 12855439 [TBL] [Abstract][Full Text] [Related]
47. Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. Reeder J; Giegerich R BMC Bioinformatics; 2004 Aug; 5():104. PubMed ID: 15294028 [TBL] [Abstract][Full Text] [Related]
48. PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences. Chikkagoudar S; Livesay DR; Roshan U Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W59-63. PubMed ID: 20522510 [TBL] [Abstract][Full Text] [Related]
49. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Ji Y; Xu X; Stormo GD Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926 [TBL] [Abstract][Full Text] [Related]
50. An algorithm for searching RNA motifs in genomic sequences. Liu J; Ma B; Zhang K Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512 [TBL] [Abstract][Full Text] [Related]
51. A structure-based flexible search method for motifs in RNA. Veksler-Lublinsky I; Ziv-Ukelson M; Barash D; Kedem K J Comput Biol; 2007 Sep; 14(7):908-26. PubMed ID: 17803370 [TBL] [Abstract][Full Text] [Related]
52. Sequence and structure analysis of noncoding RNAs. Washietl S Methods Mol Biol; 2010; 609():285-306. PubMed ID: 20221926 [TBL] [Abstract][Full Text] [Related]
57. RNA secondary structural alignment with conditional random fields. Sato K; Sakakibara Y Bioinformatics; 2005 Sep; 21 Suppl 2():ii237-42. PubMed ID: 16204111 [TBL] [Abstract][Full Text] [Related]
58. An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast. Taneda A BMC Bioinformatics; 2008 Dec; 9():521. PubMed ID: 19061486 [TBL] [Abstract][Full Text] [Related]
59. Robust prediction of consensus secondary structures using averaged base pairing probability matrices. Kiryu H; Kin T; Asai K Bioinformatics; 2007 Feb; 23(4):434-41. PubMed ID: 17182698 [TBL] [Abstract][Full Text] [Related]
60. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space. Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]