BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 18558679)

  • 1. Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein.
    Dhulesia A; Gsponer J; Vendruscolo M
    J Am Chem Soc; 2008 Jul; 130(28):8931-9. PubMed ID: 18558679
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E.
    Zhang J; Sapienza PJ; Ke H; Chang A; Hengel SR; Wang H; Phillips GN; Lee AL
    Biochemistry; 2010 Nov; 49(43):9280-91. PubMed ID: 20839809
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e.
    Cilia E; Vuister GW; Lenaerts T
    PLoS Comput Biol; 2012; 8(11):e1002794. PubMed ID: 23209399
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Energetics of peptide recognition by the second PDZ domain of human protein tyrosine phosphatase 1E.
    Milev S; Bjelić S; Georgiev O; Jelesarov I
    Biochemistry; 2007 Jan; 46(4):1064-78. PubMed ID: 17240990
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Long-Range Conformational Response of a PDZ Domain to Ligand Binding and Release: A Molecular Dynamics Study.
    Lu C; Knecht V; Stock G
    J Chem Theory Comput; 2016 Feb; 12(2):870-8. PubMed ID: 26683494
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity.
    van den Berk LC; Landi E; Walma T; Vuister GW; Dente L; Hendriks WJ
    Biochemistry; 2007 Nov; 46(47):13629-37. PubMed ID: 17979300
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
    Kalescky R; Zhou H; Liu J; Tao P
    PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The binding affinity of PTPN13's tandem PDZ2/3 domain is allosterically modulated.
    Dicks M; Kock G; Kohl B; Zhong X; Pütz S; Heumann R; Erdmann KS; Stoll R
    BMC Mol Cell Biol; 2019 Jul; 20(1):23. PubMed ID: 31286859
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
    Gerek ZN; Ozkan SB
    PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The mechanism of binding of the second PDZ domain from the Protein Tyrosine Phosphatase-BL to the Adenomatous Polyposis Coli tumor suppressor.
    Di Silvio E; Bonetti D; Toto A; Morrone A; Gianni S
    Protein Eng Des Sel; 2014 Aug; 27(8):249-53. PubMed ID: 24928580
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation of energetic and dynamic coupling networks in a PDZ domain protein.
    Fuentes EJ; Gilmore SA; Mauldin RV; Lee AL
    J Mol Biol; 2006 Dec; 364(3):337-51. PubMed ID: 17011581
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Atomic resolution protein allostery from the multi-state structure of a PDZ domain.
    Ashkinadze D; Kadavath H; Pokharna A; Chi CN; Friedmann M; Strotz D; Kumari P; Minges M; Cadalbert R; Königl S; Güntert P; Vögeli B; Riek R
    Nat Commun; 2022 Oct; 13(1):6232. PubMed ID: 36266302
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis.
    Kong Y; Karplus M
    Proteins; 2009 Jan; 74(1):145-54. PubMed ID: 18618698
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular Basis of Class III Ligand Recognition by PDZ3 in Murine Protein Tyrosine Phosphatase PTPN13.
    Kock G; Dicks M; Yip KT; Kohl B; Pütz S; Heumann R; Erdmann KS; Stoll R
    J Mol Biol; 2018 Oct; 430(21):4275-4292. PubMed ID: 30189200
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High-resolution crystal structure of the PDZ1 domain of human protein tyrosine phosphatase PTP-Bas.
    Lee SO; Lee MK; Ku B; Bae KH; Lee SC; Lim HM; Kim SJ; Chi SW
    Biochem Biophys Res Commun; 2016 Sep; 478(3):1205-10. PubMed ID: 27544031
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Understanding the effect of alternative splicing in the folding and function of the second PDZ from protein tyrosine phosphatase-BL.
    Di Silvio E; Toto A; Bonetti D; Morrone A; Gianni S
    Sci Rep; 2015 Mar; 5():9299. PubMed ID: 25788329
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Long-range conformational transition of a photoswitchable allosteric protein: molecular dynamics simulation study.
    Buchenberg S; Knecht V; Walser R; Hamm P; Stock G
    J Phys Chem B; 2014 Nov; 118(47):13468-76. PubMed ID: 25365469
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Allosteric communication pathways and thermal rectification in PDZ-2 protein: a computational study.
    Miño-Galaz GA
    J Phys Chem B; 2015 May; 119(20):6179-89. PubMed ID: 25933631
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sequence-specific 1H, 13C, and 15N assignment of the extended PDZ3 domain of the protein tyrosine phosphatase basophil-like PTP-BL.
    Kock G; Dicks M; Heumann R; Erdmann KS; Stoll R
    Biomol NMR Assign; 2010 Oct; 4(2):199-202. PubMed ID: 20563762
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL.
    Walma T; Spronk CA; Tessari M; Aelen J; Schepens J; Hendriks W; Vuister GW
    J Mol Biol; 2002 Mar; 316(5):1101-10. PubMed ID: 11884147
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.