These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

88 related articles for article (PubMed ID: 18577428)

  • 1. A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles.
    Wolff K; Vendruscolo M; Porto M
    Gene; 2008 Oct; 422(1-2):47-51. PubMed ID: 18577428
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins.
    Pereira de Araújo AF; Gomes AL; Bursztyn AA; Shakhnovich EI
    Proteins; 2008 Feb; 70(3):971-83. PubMed ID: 17847091
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.
    Zhang Y; Kihara D; Skolnick J
    Proteins; 2002 Aug; 48(2):192-201. PubMed ID: 12112688
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Folding of small proteins by Monte Carlo simulations with chemical shift restraints without the use of molecular fragment replacement or structural homology.
    Robustelli P; Cavalli A; Dobson CM; Vendruscolo M; Salvatella X
    J Phys Chem B; 2009 Jun; 113(22):7890-6. PubMed ID: 19425536
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.
    Masso M; Vaisman II
    Bioinformatics; 2008 Sep; 24(18):2002-9. PubMed ID: 18632749
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improved greedy algorithm for protein structure reconstruction.
    Tuffery P; Guyon F; Derreumaux P
    J Comput Chem; 2005 Apr; 26(5):506-13. PubMed ID: 15693017
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of structural similarity based on reduced dimensionality representations of protein structure.
    Albrecht B; Grant GH; Richards WG
    Protein Eng Des Sel; 2004 May; 17(5):425-32. PubMed ID: 15187225
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure.
    Bystroff C; Webb-Robertson BJ
    BMC Bioinformatics; 2008 Oct; 9():429. PubMed ID: 18847485
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Conformational search of peptides and proteins: Monte Carlo minimization with an adaptive bias method applied to the heptapeptide deltorphin.
    Ozkan SB; Meirovitch H
    J Comput Chem; 2004 Mar; 25(4):565-72. PubMed ID: 14735574
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metadynamic sampling of the free-energy landscapes of proteins coupled with a Monte Carlo algorithm.
    Marini F; Camilloni C; Provasi D; Broglia RA; Tiana G
    Gene; 2008 Oct; 422(1-2):37-40. PubMed ID: 18593595
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Free-energy-driven folding and thermodynamics of the 67-residue protein GS-alpha3W--a large-scale Monte Carlo study.
    Meinke JH; Hansmann UH
    J Comput Chem; 2009 Aug; 30(11):1642-8. PubMed ID: 19499540
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analysis of protein contacts into Protein Units.
    Faure G; Bornot A; de Brevern AG
    Biochimie; 2009 Jul; 91(7):876-87. PubMed ID: 19383526
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Challenges in structure prediction of oligomeric proteins at the united-residue level: searching the multiple-chain energy landscape with CSA and CFMC.
    Saunders JA; Scheraga HA
    Biopolymers; 2003 Mar; 68(3):318-32. PubMed ID: 12601792
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Annealing contour Monte Carlo algorithm for structure optimization in an off-lattice protein model.
    Liang F
    J Chem Phys; 2004 Apr; 120(14):6756-63. PubMed ID: 15267570
    [TBL] [Abstract][Full Text] [Related]  

  • 15. All-atom Monte Carlo approach to protein-peptide binding.
    Staneva I; Wallin S
    J Mol Biol; 2009 Nov; 393(5):1118-28. PubMed ID: 19733177
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate estimation of the density of states from Monte Carlo transition probability data.
    Fenwick MK
    J Chem Phys; 2006 Oct; 125(14):144905. PubMed ID: 17042648
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Monte Carlo sampling of near-native structures of proteins with applications.
    Zhang J; Lin M; Chen R; Liang J; Liu JS
    Proteins; 2007 Jan; 66(1):61-8. PubMed ID: 17039507
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detecting near-native docking decoys by Monte Carlo stability analysis.
    Lorenzen S
    Genome Inform; 2007; 18():206-14. PubMed ID: 18546488
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins.
    Zhuravlev PI; Materese CK; Papoian GA
    J Phys Chem B; 2009 Jul; 113(26):8800-12. PubMed ID: 19453123
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.