117 related articles for article (PubMed ID: 18579159)
1. Optimizing the codon usage of synthetic gene with QPSO algorithm.
Cai Y; Sun J; Wang J; Ding Y; Tian N; Liao X; Xu W
J Theor Biol; 2008 Sep; 254(1):123-7. PubMed ID: 18579159
[TBL] [Abstract][Full Text] [Related]
2. Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.
Hatfield GW; Roth DA
Biotechnol Annu Rev; 2007; 13():27-42. PubMed ID: 17875472
[TBL] [Abstract][Full Text] [Related]
3. The Synthetic Gene Designer: a flexible web platform to explore sequence manipulation for heterologous expression.
Wu G; Bashir-Bello N; Freeland SJ
Protein Expr Purif; 2006 Jun; 47(2):441-5. PubMed ID: 16376569
[TBL] [Abstract][Full Text] [Related]
4. GASCO: genetic algorithm simulation for codon optimization.
Sandhu KS; Pandey S; Maiti S; Pillai B
In Silico Biol; 2008; 8(2):187-92. PubMed ID: 18928205
[TBL] [Abstract][Full Text] [Related]
5. Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula.
Ingvarsson PK
Mol Biol Evol; 2007 Mar; 24(3):836-44. PubMed ID: 17204548
[TBL] [Abstract][Full Text] [Related]
6. JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.
Grote A; Hiller K; Scheer M; Münch R; Nörtemann B; Hempel DC; Jahn D
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W526-31. PubMed ID: 15980527
[TBL] [Abstract][Full Text] [Related]
7. COStar: a D-star Lite-based dynamic search algorithm for codon optimization.
Liu X; Deng R; Wang J; Wang X
J Theor Biol; 2014 Mar; 344():19-30. PubMed ID: 24316385
[TBL] [Abstract][Full Text] [Related]
8. Modeling and optimization of microbial hyaluronic acid production by Streptococcus zooepidemicus using radial basis function neural network coupling quantum-behaved particle swarm optimization algorithm.
Liu L; Sun J; Xu W; Du G; Chen J
Biotechnol Prog; 2009; 25(6):1819-25. PubMed ID: 19691123
[TBL] [Abstract][Full Text] [Related]
9. UpGene: Application of a web-based DNA codon optimization algorithm.
Gao W; Rzewski A; Sun H; Robbins PD; Gambotto A
Biotechnol Prog; 2004; 20(2):443-8. PubMed ID: 15058988
[TBL] [Abstract][Full Text] [Related]
10. Codon optimization can improve expression of human genes in Escherichia coli: A multi-gene study.
Burgess-Brown NA; Sharma S; Sobott F; Loenarz C; Oppermann U; Gileadi O
Protein Expr Purif; 2008 May; 59(1):94-102. PubMed ID: 18289875
[TBL] [Abstract][Full Text] [Related]
11. Quantum-behaved particle swarm optimization: analysis of individual particle behavior and parameter selection.
Sun J; Fang W; Wu X; Palade V; Xu W
Evol Comput; 2012; 20(3):349-93. PubMed ID: 21905841
[TBL] [Abstract][Full Text] [Related]
12. The computational detection of functional nucleotide sequence motifs in the coding regions of organisms.
Robins H; Krasnitz M; Levine AJ
Exp Biol Med (Maywood); 2008 Jun; 233(6):665-73. PubMed ID: 18408149
[TBL] [Abstract][Full Text] [Related]
13. Gene Designer: a synthetic biology tool for constructing artificial DNA segments.
Villalobos A; Ness JE; Gustafsson C; Minshull J; Govindarajan S
BMC Bioinformatics; 2006 Jun; 7():285. PubMed ID: 16756672
[TBL] [Abstract][Full Text] [Related]
14. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
Bao L; Gu H; Dunn KA; Bielawski JP
Mol Biol Evol; 2008 Sep; 25(9):1995-2007. PubMed ID: 18586695
[TBL] [Abstract][Full Text] [Related]
15. In silico diagnosis of inherently inhibited gene expression focusing on initial codon combinations.
Ohashi Y; Yamashiro A; Washio T; Ishii N; Ohshima H; Michishita T; Tomita M; Itaya M
Gene; 2005 Feb; 347(1):11-9. PubMed ID: 15716115
[TBL] [Abstract][Full Text] [Related]
16. Codon optimization improves heterologous expression of a Schistosoma mansoni cDNA in HEK293 cells.
Hamdan FF; Mousa A; Ribeiro P
Parasitol Res; 2002 Jun; 88(6):583-6. PubMed ID: 12107483
[TBL] [Abstract][Full Text] [Related]
17. A Swarm Optimization Genetic Algorithm Based on Quantum-Behaved Particle Swarm Optimization.
Sun T; Xu MH
Comput Intell Neurosci; 2017; 2017():2782679. PubMed ID: 28630619
[TBL] [Abstract][Full Text] [Related]
18. OPTIMIZER: a web server for optimizing the codon usage of DNA sequences.
Puigbò P; Guzmán E; Romeu A; Garcia-Vallvé S
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W126-31. PubMed ID: 17439967
[TBL] [Abstract][Full Text] [Related]
19. Characterization of synonymous codon usage bias in the duck plague virus UL35 gene.
Cai MS; Cheng AC; Wang MS; Zhao LC; Zhu DK; Luo QH; Liu F; Chen XY
Intervirology; 2009; 52(5):266-78. PubMed ID: 19672100
[TBL] [Abstract][Full Text] [Related]
20. An Improved Quantum-Behaved Particle Swarm Optimization Algorithm with Elitist Breeding for Unconstrained Optimization.
Yang ZL; Wu A; Min HQ
Comput Intell Neurosci; 2015; 2015():326431. PubMed ID: 26064085
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]