These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 18583523)

  • 21. SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
    Tong J; Pei J; Grishin NV
    BMC Bioinformatics; 2015 Sep; 16(1):282. PubMed ID: 26335387
    [TBL] [Abstract][Full Text] [Related]  

  • 22. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Vorolign--fast structural alignment using Voronoi contacts.
    Birzele F; Gewehr JE; Csaba G; Zimmer R
    Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
    [TBL] [Abstract][Full Text] [Related]  

  • 24. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ
    Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Protein secondary structure prediction with SPARROW.
    Bettella F; Rasinski D; Knapp EW
    J Chem Inf Model; 2012 Feb; 52(2):545-56. PubMed ID: 22224407
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic.
    Brown P; Pullan W; Yang Y; Zhou Y
    Bioinformatics; 2016 Feb; 32(3):370-7. PubMed ID: 26454279
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A spectral approach to protein structure alignment.
    Shibberu Y; Holder A
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(4):867-75. PubMed ID: 21301031
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Representing and comparing protein folds and fold families using three-dimensional shape-density representations.
    Mavridis L; Ghoorah AW; Venkatraman V; Ritchie DW
    Proteins; 2012 Feb; 80(2):530-45. PubMed ID: 22081520
    [TBL] [Abstract][Full Text] [Related]  

  • 29. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
    Saini HK; Fischer D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Evolutionary inaccuracy of pairwise structural alignments.
    Sadowski MI; Taylor WR
    Bioinformatics; 2012 May; 28(9):1209-15. PubMed ID: 22399676
    [TBL] [Abstract][Full Text] [Related]  

  • 31. PROMALS web server for accurate multiple protein sequence alignments.
    Pei J; Kim BH; Tang M; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DBAli tools: mining the protein structure space.
    Marti-Renom MA; Pieper U; Madhusudhan MS; Rossi A; Eswar N; Davis FP; Al-Shahrour F; Dopazo J; Sali A
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W393-7. PubMed ID: 17478513
    [TBL] [Abstract][Full Text] [Related]  

  • 33. FAST: a novel protein structure alignment algorithm.
    Zhu J; Weng Z
    Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Simultaneous alignment and folding of protein sequences.
    Waldispühl J; O'Donnell CW; Will S; Devadas S; Backofen R; Berger B
    J Comput Biol; 2014 Jul; 21(7):477-91. PubMed ID: 24766258
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 36. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H; Zhou Y
    Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Using Dali for Protein Structure Comparison.
    Holm L
    Methods Mol Biol; 2020; 2112():29-42. PubMed ID: 32006276
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Structural Class Classification of 3D Protein Structure Based on Multi-View 2D Images.
    Suryanto CH; Saigo H; Fukui K
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(1):286-299. PubMed ID: 28113600
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments.
    Minami S; Sawada K; Chikenji G
    BMC Bioinformatics; 2013 Jan; 14():24. PubMed ID: 23331634
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Overcoming sequence misalignments with weighted structural superposition.
    Khazanov NA; Damm-Ganamet KL; Quang DX; Carlson HA
    Proteins; 2012 Nov; 80(11):2523-35. PubMed ID: 22733542
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.