273 related articles for article (PubMed ID: 18586700)
1. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
2. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
3. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
4. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
5. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
Byun Y; Han K
Bioinformatics; 2009 Jun; 25(11):1435-7. PubMed ID: 19369500
[TBL] [Abstract][Full Text] [Related]
6. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
7. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
8. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
9. Prediction of RNA secondary structure by free energy minimization.
Mathews DH; Turner DH
Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
[TBL] [Abstract][Full Text] [Related]
10. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
Rivas E; Eddy SR
J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
[TBL] [Abstract][Full Text] [Related]
11. An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.
Gaspin C; Westhof E
J Mol Biol; 1995 Nov; 254(2):163-74. PubMed ID: 7490740
[TBL] [Abstract][Full Text] [Related]
12. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
13. Prediction of RNA secondary structure using generalized centroid estimators.
Hamada M; Kiryu H; Sato K; Mituyama T; Asai K
Bioinformatics; 2009 Feb; 25(4):465-73. PubMed ID: 19095700
[TBL] [Abstract][Full Text] [Related]
14. Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
Reeder J; Giegerich R
BMC Bioinformatics; 2004 Aug; 5():104. PubMed ID: 15294028
[TBL] [Abstract][Full Text] [Related]
15. Boltzmann probability of RNA structural neighbors and riboswitch detection.
Freyhult E; Moulton V; Clote P
Bioinformatics; 2007 Aug; 23(16):2054-62. PubMed ID: 17573364
[TBL] [Abstract][Full Text] [Related]
16. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
Reeder J; Steffen P; Giegerich R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W320-4. PubMed ID: 17478505
[TBL] [Abstract][Full Text] [Related]
17. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
Ren J; Rastegari B; Condon A; Hoos HH
RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
[TBL] [Abstract][Full Text] [Related]
18. A partition function algorithm for nucleic acid secondary structure including pseudoknots.
Dirks RM; Pierce NA
J Comput Chem; 2003 Oct; 24(13):1664-77. PubMed ID: 12926009
[TBL] [Abstract][Full Text] [Related]
19. RNAbor: a web server for RNA structural neighbors.
Freyhult E; Moulton V; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
[TBL] [Abstract][Full Text] [Related]
20. Efficient parameter estimation for RNA secondary structure prediction.
Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
