BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 18586733)

  • 1. Matching isotopic distributions from metabolically labeled samples.
    McIlwain S; Page D; Huttlin EL; Sussman MR
    Bioinformatics; 2008 Jul; 24(13):i339-47. PubMed ID: 18586733
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using dynamic programming to create isotopic distribution maps from mass spectra.
    McIlwain S; Page D; Huttlin EL; Sussman MR
    Bioinformatics; 2007 Jul; 23(13):i328-36. PubMed ID: 17646314
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An automated method for the analysis of stable isotope labeling data in proteomics.
    Zhang X; Hines W; Adamec J; Asara JM; Naylor S; Regnier FE
    J Am Soc Mass Spectrom; 2005 Jul; 16(7):1181-91. PubMed ID: 15922621
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling.
    Sweredoski MJ; Donovan KJ; Nguyen BD; Shaka AJ; Baldi P
    Bioinformatics; 2007 Nov; 23(21):2829-35. PubMed ID: 17895278
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Data reduction of isotope-resolved LC-MS spectra.
    Du P; Sudha R; Prystowsky MB; Angeletti RH
    Bioinformatics; 2007 Jun; 23(11):1394-400. PubMed ID: 17496000
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.
    Lu B; Chen T
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii113-21. PubMed ID: 14534180
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantification of peptide m/z distributions from 13C-labeled cultures with high-resolution mass spectrometry.
    Allen DK; Goldford J; Gierse JK; Mandy D; Diepenbrock C; Libourel IG
    Anal Chem; 2014 Feb; 86(3):1894-901. PubMed ID: 24387081
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns.
    Volchenboum SL; Kristjansdottir K; Wolfgeher D; Kron SJ
    Mol Cell Proteomics; 2009 Aug; 8(8):2011-22. PubMed ID: 19435713
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.
    Feng J; Naiman DQ; Cooper B
    Bioinformatics; 2007 Sep; 23(17):2210-7. PubMed ID: 17510167
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A model-based method for the prediction of the isotopic distribution of peptides.
    Valkenborg D; Jansen I; Burzykowski T
    J Am Soc Mass Spectrom; 2008 May; 19(5):703-12. PubMed ID: 18325782
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
    Xu T; Park SK; Venable JD; Wohlschlegel JA; Diedrich JK; Cociorva D; Lu B; Liao L; Hewel J; Han X; Wong CCL; Fonslow B; Delahunty C; Gao Y; Shah H; Yates JR
    J Proteomics; 2015 Nov; 129():16-24. PubMed ID: 26171723
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An affinity for new proteins.
    Doerr A
    Nat Methods; 2006 Aug; 3(8):584-5. PubMed ID: 16892525
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The probability distribution for a random match between an experimental-theoretical spectral pair in tandem mass spectrometry.
    Fridman T; Razumovskaya J; Verberkmoes N; Hurst G; Protopopescu V; Xu Y
    J Bioinform Comput Biol; 2005 Apr; 3(2):455-76. PubMed ID: 15852515
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.
    Klammer AA; Reynolds SM; Bilmes JA; MacCoss MJ; Noble WS
    Bioinformatics; 2008 Jul; 24(13):i348-56. PubMed ID: 18586734
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Split-field drift tube/mass spectrometry and isotopic labeling techniques for determination of single amino acid polymorphisms.
    Valentine SJ; Sevugarajan S; Kurulugama RT; Koeniger SL; Merenbloom SI; Bohrer BC; Clemmer DE
    J Proteome Res; 2006 Aug; 5(8):1879-87. PubMed ID: 16889409
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Determination of monoisotopic masses of chimera spectra from high-resolution mass spectrometric data by use of isotopic peak intensity ratio modeling.
    Niu M; Mao X; Ying W; Qin W; Zhang Y; Qian X
    Rapid Commun Mass Spectrom; 2012 Aug; 26(16):1875-86. PubMed ID: 22777790
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.
    Yan B; Pan C; Olman VN; Hettich RL; Xu Y
    Bioinformatics; 2005 Mar; 21(5):563-74. PubMed ID: 15454408
    [TBL] [Abstract][Full Text] [Related]  

  • 18. rMSIannotation: A peak annotation tool for mass spectrometry imaging based on the analysis of isotopic intensity ratios.
    Sementé L; Baquer G; García-Altares M; Correig-Blanchar X; Ràfols P
    Anal Chim Acta; 2021 Aug; 1171():338669. PubMed ID: 34112434
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PARPST: a PARallel algorithm to find peptide sequence tags.
    Brunetti S; Lodi E; Mori E; Stella M
    BMC Bioinformatics; 2008 Apr; 9 Suppl 4(Suppl 4):S11. PubMed ID: 18460172
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SVM model for quality assessment of medium resolution mass spectra from 18O-water labeling experiments.
    Nefedov AV; Gilski MJ; Sadygov RG
    J Proteome Res; 2011 Apr; 10(4):2095-103. PubMed ID: 21247216
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.