BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 18586748)

  • 1. MACHOS: Markov clusters of homologous subsequences.
    Wong S; Ragan MA
    Bioinformatics; 2008 Jul; 24(13):i77-85. PubMed ID: 18586748
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of protein interdomain linker regions by a hidden Markov model.
    Bae K; Mallick BK; Elsik CG
    Bioinformatics; 2005 May; 21(10):2264-70. PubMed ID: 15746283
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A new algorithm for detecting low-complexity regions in protein sequences.
    Shin SW; Kim SM
    Bioinformatics; 2005 Jan; 21(2):160-70. PubMed ID: 15333459
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
    Pascual-García A; Abia D; Ortiz AR; Bastolla U
    PLoS Comput Biol; 2009 Mar; 5(3):e1000331. PubMed ID: 19325884
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated protein subfamily identification and classification.
    Brown DP; Krishnamurthy N; Sjölander K
    PLoS Comput Biol; 2007 Aug; 3(8):e160. PubMed ID: 17708678
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
    Gibbons TR; Mount SM; Cooper ED; Delwiche CF
    BMC Bioinformatics; 2015 Jul; 16():218. PubMed ID: 26160651
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Clustering evolving proteins into homologous families.
    Chan CX; Mahbob M; Ragan MA
    BMC Bioinformatics; 2013 Apr; 14():120. PubMed ID: 23566217
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence.
    Barbosa-Silva A; Satagopam VP; Schneider R; Ortega JM
    BMC Bioinformatics; 2008 Mar; 9():141. PubMed ID: 18321373
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The metric space of proteins-comparative study of clustering algorithms.
    Sasson O; Linial N; Linial M
    Bioinformatics; 2002; 18 Suppl 1():S14-21. PubMed ID: 12169526
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
    Kahsay RY; Wang G; Gao G; Liao L; Dunbrack R
    Bioinformatics; 2005 May; 21(10):2287-93. PubMed ID: 15797916
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Designing patterns for profile HMM search.
    Sun Y; Buhler J
    Bioinformatics; 2007 Jan; 23(2):e36-43. PubMed ID: 17237102
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein secondary structure prediction for a single-sequence using hidden semi-Markov models.
    Aydin Z; Altunbasak Y; Borodovsky M
    BMC Bioinformatics; 2006 Mar; 7():178. PubMed ID: 16571137
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identifying protein domains with the Pfam database.
    Finn R; Griffiths-Jones S; Bateman A
    Curr Protoc Bioinformatics; 2003 May; Chapter 2():Unit 2.5. PubMed ID: 18428696
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein secondary structure: entropy, correlations and prediction.
    Crooks GE; Brenner SE
    Bioinformatics; 2004 Jul; 20(10):1603-11. PubMed ID: 14988117
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CLUSS: clustering of protein sequences based on a new similarity measure.
    Kelil A; Wang S; Brzezinski R; Fleury A
    BMC Bioinformatics; 2007 Aug; 8():286. PubMed ID: 17683581
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An alternative model of amino acid replacement.
    Crooks GE; Brenner SE
    Bioinformatics; 2005 Apr; 21(7):975-80. PubMed ID: 15531614
    [TBL] [Abstract][Full Text] [Related]  

  • 19. High-quality sequence clustering guided by network topology and multiple alignment likelihood.
    Miele V; Penel S; Daubin V; Picard F; Kahn D; Duret L
    Bioinformatics; 2012 Apr; 28(8):1078-85. PubMed ID: 22368255
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.