580 related articles for article (PubMed ID: 18592192)
21. FASTA-SWAP and FASTA-PAT: pattern database searches using combinations of aligned amino acids, and a novel scoring theory.
Ladunga I; Wiese BA; Smith RF
J Mol Biol; 1996 Jun; 259(4):840-54. PubMed ID: 8683587
[TBL] [Abstract][Full Text] [Related]
22. Sequence and hydropathy profile analysis of two classes of secondary transporters.
Lolkema JS; Slotboom DJ
Mol Membr Biol; 2005; 22(3):177-89. PubMed ID: 16096261
[TBL] [Abstract][Full Text] [Related]
23. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
24. Tracembler--software for in-silico chromosome walking in unassembled genomes.
Dong Q; Wilkerson MD; Brendel V
BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
[TBL] [Abstract][Full Text] [Related]
25. A parallel pairwise local sequence alignment algorithm.
Bandyopadhyay S; Mitra R
IEEE Trans Nanobioscience; 2009 Jun; 8(2):139-46. PubMed ID: 19366648
[TBL] [Abstract][Full Text] [Related]
26. Protein multiple sequence alignment.
Do CB; Katoh K
Methods Mol Biol; 2008; 484():379-413. PubMed ID: 18592193
[TBL] [Abstract][Full Text] [Related]
27. Code optimization of the subroutine to remove near identical matches in the sequence database homology search tool PSI-BLAST.
Aspnäs M; Mattila K; Osowski K; Westerholm J
J Comput Biol; 2010 Jun; 17(6):819-23. PubMed ID: 20583927
[TBL] [Abstract][Full Text] [Related]
28. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
Merkeev IV; Mironov AA
BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
[TBL] [Abstract][Full Text] [Related]
29. Inferring function from homology.
Emes RD
Methods Mol Biol; 2008; 453():149-68. PubMed ID: 18712301
[TBL] [Abstract][Full Text] [Related]
30. Practical and predictive bioinformatics methods for the identification of potentially cross-reactive protein matches.
Goodman RE
Mol Nutr Food Res; 2006 Jul; 50(7):655-60. PubMed ID: 16810734
[TBL] [Abstract][Full Text] [Related]
31. Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
Anand B; Gowri VS; Srinivasan N
Bioinformatics; 2005 Jun; 21(12):2821-6. PubMed ID: 15817691
[TBL] [Abstract][Full Text] [Related]
32. PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology.
Saebø PE; Andersen SM; Myrseth J; Laerdahl JK; Rognes T
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W535-9. PubMed ID: 15980529
[TBL] [Abstract][Full Text] [Related]
33. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
34. The WWWH of remote homolog detection: the state of the art.
Fariselli P; Rossi I; Capriotti E; Casadio R
Brief Bioinform; 2007 Mar; 8(2):78-87. PubMed ID: 17003074
[TBL] [Abstract][Full Text] [Related]
35. Detecting distant homologs using phylogenetic tree-based HMMs.
Qian B; Goldstein RA
Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
[TBL] [Abstract][Full Text] [Related]
36. CAALIGN: a program for pairwise and multiple protein-structure alignment.
Oldfield TJ
Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
[TBL] [Abstract][Full Text] [Related]
37. Fast protein tertiary structure retrieval based on global surface shape similarity.
Sael L; Li B; La D; Fang Y; Ramani K; Rustamov R; Kihara D
Proteins; 2008 Sep; 72(4):1259-73. PubMed ID: 18361455
[TBL] [Abstract][Full Text] [Related]
38. Automatic generation and evaluation of sparse protein signatures for families of protein structural domains.
Blades MJ; Ison JC; Ranasinghe R; Findlay JB
Protein Sci; 2005 Jan; 14(1):13-23. PubMed ID: 15608116
[TBL] [Abstract][Full Text] [Related]
39. YASS: enhancing the sensitivity of DNA similarity search.
Noé L; Kucherov G
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
[TBL] [Abstract][Full Text] [Related]
40. A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.
Webb-Robertson BJ; Oehmen CS; Shah AR
Comput Biol Chem; 2008 Dec; 32(6):458-61. PubMed ID: 18722814
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
