These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

252 related articles for article (PubMed ID: 18607001)

  • 1. Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex.
    Van Melckebeke H; Devany M; Di Primo C; Beaurain F; Toulmé JJ; Bryce DL; Boisbouvier J
    Proc Natl Acad Sci U S A; 2008 Jul; 105(27):9210-5. PubMed ID: 18607001
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer.
    Lebars I; Richard T; Di Primo C; Toulmé JJ
    Nucleic Acids Res; 2007; 35(18):6103-14. PubMed ID: 17768146
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer.
    Beaurain F; Di Primo C; Toulmé JJ; Laguerre M
    Nucleic Acids Res; 2003 Jul; 31(14):4275-84. PubMed ID: 12853646
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Is a closing "GA pair" a rule for stable loop-loop RNA complexes?
    Ducongé F; Di Primo C; Toulme JJ
    J Biol Chem; 2000 Jul; 275(28):21287-94. PubMed ID: 10801857
    [TBL] [Abstract][Full Text] [Related]  

  • 5. In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.
    Ducongé F; Toulmé JJ
    RNA; 1999 Dec; 5(12):1605-14. PubMed ID: 10606271
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance.
    Lebars I; Legrand P; Aimé A; Pinaud N; Fribourg S; Di Primo C
    Nucleic Acids Res; 2008 Dec; 36(22):7146-56. PubMed ID: 18996893
    [TBL] [Abstract][Full Text] [Related]  

  • 7. In vitro selection of RNA aptamers derived from a genomic human library against the TAR RNA element of HIV-1.
    Watrin M; Von Pelchrzim F; Dausse E; Schroeder R; Toulmé JJ
    Biochemistry; 2009 Jul; 48(26):6278-84. PubMed ID: 19496624
    [TBL] [Abstract][Full Text] [Related]  

  • 8. NMR characterization of a kissing complex formed between the TAR RNA element of HIV-1 and a DNA aptamer.
    Collin D; van Heijenoort C; Boiziau C; Toulmé JJ; Guittet E
    Nucleic Acids Res; 2000 Sep; 28(17):3386-91. PubMed ID: 10954609
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LNA derivatives of a kissing aptamer targeted to the trans-activating responsive RNA element of HIV-1.
    Lebars I; Richard T; Di Primo C; Toulmé JJ
    Blood Cells Mol Dis; 2007; 38(3):204-9. PubMed ID: 17300966
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Slight sequence modifications unexpectedly alter the metal-dependency of a kissing-loop interaction.
    Ohuchi SP; Nakamura Y
    Nucleic Acids Symp Ser (Oxf); 2007; (51):395-6. PubMed ID: 18029753
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging.
    Harrich D; Hooker CW; Parry E
    J Virol; 2000 Jun; 74(12):5639-46. PubMed ID: 10823871
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Aptamers targeted to an RNA hairpin show improved specificity compared to that of complementary oligonucleotides.
    Darfeuille F; Reigadas S; Hansen JB; Orum H; Di Primo C; Toulmé JJ
    Biochemistry; 2006 Oct; 45(39):12076-82. PubMed ID: 17002307
    [TBL] [Abstract][Full Text] [Related]  

  • 13. 2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription.
    Darfeuille F; Arzumanov A; Gait MJ; Di Primo C; Toulmé JJ
    Biochemistry; 2002 Oct; 41(40):12186-92. PubMed ID: 12356320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Closing loop base pairs in RNA loop-loop complexes: structural behavior, interaction energy and solvation analysis through molecular dynamics simulations.
    Golebiowski J; Antonczak S; Fernandez-Carmona J; Condom R; Cabrol-Bass D
    J Mol Model; 2004 Dec; 10(5-6):408-17. PubMed ID: 15597210
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome.
    Chang KY; Tinoco I
    Proc Natl Acad Sci U S A; 1994 Aug; 91(18):8705-9. PubMed ID: 8078946
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure and dimerization of HIV-1 kissing loop aptamers.
    Lodmell JS; Ehresmann C; Ehresmann B; Marquet R
    J Mol Biol; 2001 Aug; 311(3):475-90. PubMed ID: 11493002
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hexitol nucleic acid-containing aptamers are efficient ligands of HIV-1 TAR RNA.
    Kolb G; Reigadas S; Boiziau C; van Aerschot A; Arzumanov A; Gait MJ; Herdewijn P; Toulmé JJ
    Biochemistry; 2005 Mar; 44(8):2926-33. PubMed ID: 15723535
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Loop-loop interaction of HIV-1 TAR RNA with N3'-->P5' deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcription.
    Darfeuille F; Arzumanov A; Gryaznov S; Gait MJ; Di Primo C; Toulmé JJ
    Proc Natl Acad Sci U S A; 2002 Jul; 99(15):9709-14. PubMed ID: 12105271
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
    Chavali SS; Mali SM; Jenkins JL; Fasan R; Wedekind JE
    J Biol Chem; 2020 Dec; 295(49):16470-16486. PubMed ID: 33051202
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization.
    Pitt SW; Majumdar A; Serganov A; Patel DJ; Al-Hashimi HM
    J Mol Biol; 2004 Apr; 338(1):7-16. PubMed ID: 15050819
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.