448 related articles for article (PubMed ID: 18611009)
1. On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes.
Mukherjee A; Lavery R; Bagchi B; Hynes JT
J Am Chem Soc; 2008 Jul; 130(30):9747-55. PubMed ID: 18611009
[TBL] [Abstract][Full Text] [Related]
2. Multistep drug intercalation: molecular dynamics and free energy studies of the binding of daunomycin to DNA.
Wilhelm M; Mukherjee A; Bouvier B; Zakrzewska K; Hynes JT; Lavery R
J Am Chem Soc; 2012 May; 134(20):8588-96. PubMed ID: 22548344
[TBL] [Abstract][Full Text] [Related]
3. Molecular mechanics and molecular dynamics studies of the intercalation of dynemicin-A with oligonucleotide models of DNA.
Cardozo MG; Hopfinger AJ
Mol Pharmacol; 1991 Dec; 40(6):1023-8. PubMed ID: 1758437
[TBL] [Abstract][Full Text] [Related]
4. Early stage intercalation of doxorubicin to DNA fragments observed in molecular dynamics binding simulations.
Lei H; Wang X; Wu C
J Mol Graph Model; 2012 Sep; 38():279-89. PubMed ID: 23079648
[TBL] [Abstract][Full Text] [Related]
5. Intercalation of daunomycin into stacked DNA base pairs. DFT study of an anticancer drug.
Barone G; Guerra CF; Gambino N; Silvestri A; Lauria A; Almerico AM; Bickelhaupt FM
J Biomol Struct Dyn; 2008 Aug; 26(1):115-30. PubMed ID: 18533732
[TBL] [Abstract][Full Text] [Related]
6. Binding of cationic and neutral phenanthridine intercalators to a DNA oligomer is controlled by dispersion energy: quantum chemical calculations and molecular mechanics simulations.
Kubar T; Hanus M; Ryjácek F; Hobza P
Chemistry; 2005 Dec; 12(1):280-90. PubMed ID: 16294358
[TBL] [Abstract][Full Text] [Related]
7. Detecting DNA mismatches with metallo-insertors: a molecular simulation study.
Vargiu AV; Magistrato A
Inorg Chem; 2012 Feb; 51(4):2046-57. PubMed ID: 22288501
[TBL] [Abstract][Full Text] [Related]
8. The geometry of intercalation complex of antitumor mitoxantrone and ametantrone with DNA: molecular dynamics simulations.
Mazerski J; Martelli S; Borowski E
Acta Biochim Pol; 1998; 45(1):1-11. PubMed ID: 9701490
[TBL] [Abstract][Full Text] [Related]
9. Solution structural study of a DNA duplex containing the guanine-N7 adduct formed by a cytotoxic platinum-acridine hybrid agent.
Baruah H; Wright MW; Bierbach U
Biochemistry; 2005 Apr; 44(16):6059-70. PubMed ID: 15835895
[TBL] [Abstract][Full Text] [Related]
10. Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution.
Spacková N; Cheatham TE; Ryjácek F; Lankas F; Van Meervelt L; Hobza P; Sponer J
J Am Chem Soc; 2003 Feb; 125(7):1759-69. PubMed ID: 12580601
[TBL] [Abstract][Full Text] [Related]
11. Conformation and dynamics of drug-DNA intercalation.
Herzyk P; Neidle S; Goodfellow JM
J Biomol Struct Dyn; 1992 Aug; 10(1):97-139. PubMed ID: 1418749
[TBL] [Abstract][Full Text] [Related]
12. Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.
Banavali NK; MacKerell AD
J Mol Biol; 2002 May; 319(1):141-60. PubMed ID: 12051942
[TBL] [Abstract][Full Text] [Related]
13. Intercalation and de-intercalation pathway of proflavine through the minor and major grooves of DNA: roles of water and entropy.
Sasikala WD; Mukherjee A
Phys Chem Chem Phys; 2013 May; 15(17):6446-55. PubMed ID: 23525232
[TBL] [Abstract][Full Text] [Related]
14. Molecular mechanism of direct proflavine-DNA intercalation: evidence for drug-induced minimum base-stacking penalty pathway.
Sasikala WD; Mukherjee A
J Phys Chem B; 2012 Oct; 116(40):12208-12. PubMed ID: 22978751
[TBL] [Abstract][Full Text] [Related]
15. A model for the dynemicin-A cleavage of DNA using molecular dynamics simulation.
Cardozo MG; Hopfinger AJ
Biopolymers; 1993 Mar; 33(3):377-88. PubMed ID: 8461449
[TBL] [Abstract][Full Text] [Related]
16. Molecular dynamic simulations of the intercalation of benzothiopyranoindazole anticancer analogs with DNA models.
Kawakami Y; Hopfinger AJ
Anticancer Drug Des; 1992 Jun; 7(3):181-201. PubMed ID: 1610479
[TBL] [Abstract][Full Text] [Related]
17. Binding of proteins to the minor groove of DNA: what are the structural and energetic determinants for kinking a basepair step?
Bosch D; Campillo M; Pardo L
J Comput Chem; 2003 Apr; 24(6):682-91. PubMed ID: 12666159
[TBL] [Abstract][Full Text] [Related]
18. Small molecule intercalation with double stranded DNA: implications for normal gene regulation and for predicting the biological efficacy and genotoxicity of drugs and other chemicals.
Hendry LB; Mahesh VB; Bransome ED; Ewing DE
Mutat Res; 2007 Oct; 623(1-2):53-71. PubMed ID: 17449065
[TBL] [Abstract][Full Text] [Related]
19. The intercalation of DNA double helices with doxorubicin and nogalamycin.
Box VG
J Mol Graph Model; 2007 Jul; 26(1):14-9. PubMed ID: 17046298
[TBL] [Abstract][Full Text] [Related]
20. Entropy of water in the hydration layer of major and minor grooves of DNA.
Jana B; Pal S; Maiti PK; Lin ST; Hynes JT; Bagchi B
J Phys Chem B; 2006 Oct; 110(39):19611-8. PubMed ID: 17004828
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
