BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 18616801)

  • 1. Investigating selection on viruses: a statistical alignment approach.
    de Groot S; Mailund T; Lunter G; Hein J
    BMC Bioinformatics; 2008 Jul; 9():304. PubMed ID: 18616801
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Annotation of selection strengths in viral genomes.
    McCauley S; de Groot S; Mailund T; Hein J
    Bioinformatics; 2007 Nov; 23(22):2978-86. PubMed ID: 17921171
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparative annotation of viral genomes with non-conserved gene structure.
    de Groot S; Mailund T; Hein J
    Bioinformatics; 2007 May; 23(9):1080-9. PubMed ID: 17341494
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Robust inference of positive selection from recombining coding sequences.
    Scheffler K; Martin DP; Seoighe C
    Bioinformatics; 2006 Oct; 22(20):2493-9. PubMed ID: 16895925
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Using hidden Markov models and observed evolution to annotate viral genomes.
    McCauley S; Hein J
    Bioinformatics; 2006 Jun; 22(11):1308-16. PubMed ID: 16613911
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting overlapping coding sequences with pairwise alignments.
    Firth AE; Brown CM
    Bioinformatics; 2005 Feb; 21(3):282-92. PubMed ID: 15347574
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences.
    Sabath N; Morris JS; Graur D
    J Mol Evol; 2011 Dec; 73(5-6):305-15. PubMed ID: 22187135
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FRESCo: finding regions of excess synonymous constraint in diverse viruses.
    Sealfon RS; Lin MF; Jungreis I; Wolf MY; Kellis M; Sabeti PC
    Genome Biol; 2015 Feb; 16(1):38. PubMed ID: 25853568
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
    Lunter G; Rocco A; Mimouni N; Heger A; Caldeira A; Hein J
    Genome Res; 2008 Feb; 18(2):298-309. PubMed ID: 18073381
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Parametric alignment of Drosophila genomes.
    Dewey CN; Huggins PM; Woods K; Sturmfels B; Pachter L
    PLoS Comput Biol; 2006 Jun; 2(6):e73. PubMed ID: 16789815
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Class of multiple sequence alignment algorithm affects genomic analysis.
    Blackburne BP; Whelan S
    Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Alignment uncertainty and genomic analysis.
    Wong KM; Suchard MA; Huelsenbeck JP
    Science; 2008 Jan; 319(5862):473-6. PubMed ID: 18218900
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improving genome-wide scans of positive selection by using protein isoforms of similar length.
    Villanueva-Cañas JL; Laurie S; Albà MM
    Genome Biol Evol; 2013; 5(2):457-67. PubMed ID: 23377868
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Alvira: comparative genomics of viral strains.
    Enault F; Fremez R; Baranowski E; Faraut T
    Bioinformatics; 2007 Aug; 23(16):2178-9. PubMed ID: 17550913
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multiple sequence alignments of partially coding nucleic acid sequences.
    Stocsits RR; Hofacker IL; Fried C; Stadler PF
    BMC Bioinformatics; 2005 Jun; 6():160. PubMed ID: 15985156
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Erasing errors due to alignment ambiguity when estimating positive selection.
    Redelings B
    Mol Biol Evol; 2014 Aug; 31(8):1979-93. PubMed ID: 24866534
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting overlapping coding sequences in virus genomes.
    Firth AE; Brown CM
    BMC Bioinformatics; 2006 Feb; 7():75. PubMed ID: 16483358
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Statistical power of phylo-HMM for evolutionarily conserved element detection.
    Fan X; Zhu J; Schadt EE; Liu JS
    BMC Bioinformatics; 2007 Oct; 8():374. PubMed ID: 17919331
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T; Blencowe BJ; Hughes TR
    BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.