These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
106 related articles for article (PubMed ID: 18616991)
1. Using protein binding site prediction to improve protein docking. Huang B; Schroeder M Gene; 2008 Oct; 422(1-2):14-21. PubMed ID: 18616991 [TBL] [Abstract][Full Text] [Related]
2. meta-PPISP: a meta web server for protein-protein interaction site prediction. Qin S; Zhou HX Bioinformatics; 2007 Dec; 23(24):3386-7. PubMed ID: 17895276 [TBL] [Abstract][Full Text] [Related]
4. Survey of the geometric association of domain-domain interfaces. Kim WK; Ison JC Proteins; 2005 Dec; 61(4):1075-88. PubMed ID: 16247798 [TBL] [Abstract][Full Text] [Related]
5. Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. Chen H; Zhou HX Proteins; 2005 Oct; 61(1):21-35. PubMed ID: 16080151 [TBL] [Abstract][Full Text] [Related]
6. Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment. Chelliah V; Blundell TL; Fernández-Recio J J Mol Biol; 2006 Apr; 357(5):1669-82. PubMed ID: 16488431 [TBL] [Abstract][Full Text] [Related]
7. LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation. Huang B; Schroeder M BMC Struct Biol; 2006 Sep; 6():19. PubMed ID: 16995956 [TBL] [Abstract][Full Text] [Related]
8. Combination of scoring schemes for protein docking. Heuser P; Schomburg D BMC Bioinformatics; 2007 Aug; 8():279. PubMed ID: 17678526 [TBL] [Abstract][Full Text] [Related]
9. WHISCY: what information does surface conservation yield? Application to data-driven docking. de Vries SJ; van Dijk AD; Bonvin AM Proteins; 2006 May; 63(3):479-89. PubMed ID: 16450362 [TBL] [Abstract][Full Text] [Related]
10. Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions. de Vries SJ; Melquiond AS; Kastritis PL; Karaca E; Bordogna A; van Dijk M; Rodrigues JP; Bonvin AM Proteins; 2010 Nov; 78(15):3242-9. PubMed ID: 20718048 [TBL] [Abstract][Full Text] [Related]
12. Prediction of protein-ligand complex structure by docking software guided by other complex structures. Fukunishi Y; Nakamura H J Mol Graph Model; 2008 Feb; 26(6):1030-3. PubMed ID: 17692546 [TBL] [Abstract][Full Text] [Related]
13. Identification of near-native structures by clustering protein docking conformations. Lorenzen S; Zhang Y Proteins; 2007 Jul; 68(1):187-94. PubMed ID: 17397057 [TBL] [Abstract][Full Text] [Related]
14. Combining interface core and whole interface descriptors in postscan processing of protein-protein docking models. Kowalsman N; Eisenstein M Proteins; 2009 Nov; 77(2):297-318. PubMed ID: 19452551 [TBL] [Abstract][Full Text] [Related]
15. Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces. Ben-Shimon A; Eisenstein M J Mol Biol; 2005 Aug; 351(2):309-26. PubMed ID: 16019028 [TBL] [Abstract][Full Text] [Related]
16. Refinement of unbound protein docking studies using biological knowledge. Heuser P; Baù D; Benkert P; Schomburg D Proteins; 2005 Dec; 61(4):1059-67. PubMed ID: 16208723 [TBL] [Abstract][Full Text] [Related]
17. Predicting protein interaction interfaces from protein sequences: case studies of subtilisin and phycocyanin. Xie BB; Chen XL; Zhang XY; He HL; Zhang YZ; Zhou BC Proteins; 2008 May; 71(3):1461-74. PubMed ID: 18076046 [TBL] [Abstract][Full Text] [Related]
18. PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data. Hawkins T; Chitale M; Luban S; Kihara D Proteins; 2009 Feb; 74(3):566-82. PubMed ID: 18655063 [TBL] [Abstract][Full Text] [Related]
19. PresCont: predicting protein-protein interfaces utilizing four residue properties. Zellner H; Staudigel M; Trenner T; Bittkowski M; Wolowski V; Icking C; Merkl R Proteins; 2012 Jan; 80(1):154-68. PubMed ID: 22038731 [TBL] [Abstract][Full Text] [Related]
20. Sequence-based prediction of protein interaction sites with an integrative method. Chen XW; Jeong JC Bioinformatics; 2009 Mar; 25(5):585-91. PubMed ID: 19153136 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]