BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

113 related articles for article (PubMed ID: 18631020)

  • 1. Compound poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands.
    Pape UJ; Rahmann S; Sun F; Vingron M
    J Comput Biol; 2008; 15(6):547-64. PubMed ID: 18631020
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ; Rahmann S; Vingron M
    Bioinformatics; 2008 Feb; 24(3):350-7. PubMed ID: 18174183
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An improved compound Poisson model for the number of motif hits in DNA sequences.
    Kopp W; Vingron M
    Bioinformatics; 2017 Dec; 33(24):3929-3937. PubMed ID: 28961747
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Statistical detection of cooperative transcription factors with similarity adjustment.
    Pape UJ; Klein H; Vingron M
    Bioinformatics; 2009 Aug; 25(16):2103-9. PubMed ID: 19286833
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DNA Motif Match Statistics Without Poisson Approximation.
    Kopp W; Vingron M
    J Comput Biol; 2019 Aug; 26(8):846-865. PubMed ID: 30998077
    [No Abstract]   [Full Text] [Related]  

  • 6. Normal and compound poisson approximations for pattern occurrences in NGS reads.
    Zhai Z; Reinert G; Song K; Waterman MS; Luan Y; Sun F
    J Comput Biol; 2012 Jun; 19(6):839-54. PubMed ID: 22697250
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computing exact P-values for DNA motifs.
    Zhang J; Jiang B; Li M; Tromp J; Zhang X; Zhang MQ
    Bioinformatics; 2007 Mar; 23(5):531-7. PubMed ID: 17237046
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.
    Broin PÓ; Smith TJ; Golden AA
    BMC Bioinformatics; 2015 Jan; 16():22. PubMed ID: 25627106
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A novel Bayesian DNA motif comparison method for clustering and retrieval.
    Habib N; Kaplan T; Margalit H; Friedman N
    PLoS Comput Biol; 2008 Feb; 4(2):e1000010. PubMed ID: 18463706
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A transdimensional Bayesian model for pattern recognition in DNA sequences.
    Li SM; Wakefield J; Self S
    Biostatistics; 2008 Oct; 9(4):668-85. PubMed ID: 18349034
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Compound Poisson and Poisson process approximations for occurrences of multiple words in Markov chains.
    Reinert G; Schbath S
    J Comput Biol; 1998; 5(2):223-53. PubMed ID: 9672830
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Context-specific independence mixture modeling for positional weight matrices.
    Georgi B; Schliep A
    Bioinformatics; 2006 Jul; 22(14):e166-73. PubMed ID: 16873468
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MoRAine--a web server for fast computational transcription factor binding motif re-annotation.
    Baumbach J; Wittkop T; Weile J; Kohl T; Rahmann S
    J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134062
    [TBL] [Abstract][Full Text] [Related]  

  • 14. OSCAR: one-class SVM for accurate recognition of cis-elements.
    Jiang B; Zhang MQ; Zhang X
    Bioinformatics; 2007 Nov; 23(21):2823-8. PubMed ID: 17921174
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Fast and exact quantification of motif occurrences in biological sequences.
    Prosperi M; Marini S; Boucher C
    BMC Bioinformatics; 2021 Sep; 22(1):445. PubMed ID: 34537012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An efficient algorithm for improving structure-based prediction of transcription factor binding sites.
    Farrel A; Guo JT
    BMC Bioinformatics; 2017 Jul; 18(1):342. PubMed ID: 28715997
    [TBL] [Abstract][Full Text] [Related]  

  • 17. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S
    Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CIS: compound importance sampling method for protein-DNA binding site p-value estimation.
    Barash Y; Elidan G; Kaplan T; Friedman N
    Bioinformatics; 2005 Mar; 21(5):596-600. PubMed ID: 15454407
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
    Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The power of detecting enriched patterns: an HMM approach.
    Zhai Z; Ku SY; Luan Y; Reinert G; Waterman MS; Sun F
    J Comput Biol; 2010 Apr; 17(4):581-92. PubMed ID: 20426691
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.