BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

112 related articles for article (PubMed ID: 18634309)

  • 1. [Application of noninteracting probes in the protein structure space for the construction of statistical potentials for atom-atom interactions].
    Rakhmanov SV; Makeev VIu
    Biofizika; 2008; 53(3):389-96. PubMed ID: 18634309
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm.
    Fang Q; Shortle D
    J Mol Biol; 2006 Jun; 359(5):1456-67. PubMed ID: 16678202
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Water dynamics clue to key residues in protein folding.
    Gao M; Zhu H; Yao XQ; She ZS
    Biochem Biophys Res Commun; 2010 Jan; 392(1):95-9. PubMed ID: 20059982
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effects of amino acid composition, finite size of proteins, and sparse statistics on distance-dependent statistical pair potentials.
    Rykunov D; Fiser A
    Proteins; 2007 May; 67(3):559-68. PubMed ID: 17335003
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling.
    Rakhmanov SV; Makeev VJ
    BMC Struct Biol; 2007 Mar; 7():19. PubMed ID: 17397537
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Simple solvation potential for coarse-grained models of proteins.
    Bhattacharyay A; Trovato A; Seno F
    Proteins; 2007 May; 67(2):285-92. PubMed ID: 17286285
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A distance-dependent atomic knowledge-based potential and force for discrimination of native structures from decoys.
    Mirzaie M; Eslahchi C; Pezeshk H; Sadeghi M
    Proteins; 2009 Nov; 77(2):454-63. PubMed ID: 19452553
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chemical double-mutant cycles: dissecting non-covalent interactions.
    Cockroft SL; Hunter CA
    Chem Soc Rev; 2007 Feb; 36(2):172-88. PubMed ID: 17264921
    [TBL] [Abstract][Full Text] [Related]  

  • 9. [Estimation of quality of approximation of atom-atom contacts of amino acid residues in proteins by the contacts of the residue force centers].
    Lobanov MIu; Rykunov DS; Finkel'shteĭn AV
    Biofizika; 1998; 43(2):215-22. PubMed ID: 9591097
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Information-theoretic dissection of pairwise contact potentials.
    Cline MS; Karplus K; Lathrop RH; Smith TF; Rogers RG; Haussler D
    Proteins; 2002 Oct; 49(1):7-14. PubMed ID: 12211011
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A general clustering approach with application to the Miyazawa-Jernigan potentials for amino acids.
    Esteve JG; Falceto F
    Proteins; 2004 Jun; 55(4):999-1004. PubMed ID: 15146496
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Viscosity B-coefficients and standard partial molar volumes of amino acids, and their roles in interpreting the protein (enzyme) stabilization.
    Zhao H
    Biophys Chem; 2006 Aug; 122(3):157-83. PubMed ID: 16690201
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Solvent accessible surface area of amino acid residues in globular proteins: correlation of apparent transfer free energies with experimental hydrophobicity scales.
    Shaytan AK; Shaitan KV; Khokhlov AR
    Biomacromolecules; 2009 May; 10(5):1224-37. PubMed ID: 19334678
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Intraresidue distribution of energy in proteins.
    Trebbi B; Fanti M; Rossi I; Zerbetto F
    J Phys Chem B; 2005 Mar; 109(8):3586-93. PubMed ID: 16851397
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Defining and characterizing protein surface using alpha shapes.
    Albou LP; Schwarz B; Poch O; Wurtz JM; Moras D
    Proteins; 2009 Jul; 76(1):1-12. PubMed ID: 19089982
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.
    Makino Y; Itoh N
    BMC Struct Biol; 2008 Oct; 8():46. PubMed ID: 18957132
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mapping proton wires in proteins: carbonic anhydrase and GFP chromophore biosynthesis.
    Shinobu A; Agmon N
    J Phys Chem A; 2009 Jul; 113(26):7253-66. PubMed ID: 19388648
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inference of the solvation energy parameters of amino acids using maximum entropy approach.
    Hoang TX; Seno F; Trovato A; Banavar JR; Maritan A
    J Chem Phys; 2008 Jul; 129(3):035102. PubMed ID: 18647046
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.