BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

211 related articles for article (PubMed ID: 18636476)

  • 1. Genome-wide enzyme annotation with precision control: catalytic families (CatFam) databases.
    Yu C; Zavaljevski N; Desai V; Reifman J
    Proteins; 2009 Feb; 74(2):449-60. PubMed ID: 18636476
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.
    Yu C; Zavaljevski N; Desai V; Johnson S; Stevens FJ; Reifman J
    BMC Bioinformatics; 2008 Jan; 9():52. PubMed ID: 18221520
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic annotation of protein function based on family identification.
    Abascal F; Valencia A
    Proteins; 2003 Nov; 53(3):683-92. PubMed ID: 14579359
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Filtering erroneous protein annotation.
    Wieser D; Kretschmann E; Apweiler R
    Bioinformatics; 2004 Aug; 20 Suppl 1():i342-7. PubMed ID: 15262818
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis.
    Bartoli L; Montanucci L; Fronza R; Martelli PL; Fariselli P; Carota L; Donvito G; Maggi GP; Casadio R
    J Proteome Res; 2009 Sep; 8(9):4362-71. PubMed ID: 19552451
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accurate sequence-based prediction of catalytic residues.
    Zhang T; Zhang H; Chen K; Shen S; Ruan J; Kurgan L
    Bioinformatics; 2008 Oct; 24(20):2329-38. PubMed ID: 18710875
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Vector-G: multi-modular SVM-based heterotrimeric G protein prediction.
    Jain P; Wadhwa P; Aygun R; Podila G
    In Silico Biol; 2008; 8(2):141-55. PubMed ID: 18928202
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction of signal peptides in protein sequences by neural networks.
    Plewczynski D; Slabinski L; Ginalski K; Rychlewski L
    Acta Biochim Pol; 2008; 55(2):261-7. PubMed ID: 18506221
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
    Poleksic A; Fienup M
    Bioinformatics; 2008 May; 24(9):1145-53. PubMed ID: 18337259
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.
    Hawkins T; Chitale M; Luban S; Kihara D
    Proteins; 2009 Feb; 74(3):566-82. PubMed ID: 18655063
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins.
    Garrow AG; Westhead DR
    Proteins; 2007 Oct; 69(1):8-18. PubMed ID: 17557332
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Scan2S: increasing the precision of PROSITE pattern motifs using secondary structure constraints.
    Skrabanek L; Niv MY
    Proteins; 2008 Sep; 72(4):1138-47. PubMed ID: 18320586
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An improved prediction of catalytic residues in enzyme structures.
    Tang YR; Sheng ZY; Chen YZ; Zhang Z
    Protein Eng Des Sel; 2008 May; 21(5):295-302. PubMed ID: 18287176
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EzCatDB: the Enzyme Catalytic-mechanism Database.
    Nagano N
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D407-12. PubMed ID: 15608227
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Association algorithm to mine the rules that govern enzyme definition and to classify protein sequences.
    Chiu SH; Chen CC; Yuan GF; Lin TH
    BMC Bioinformatics; 2006 Jun; 7():304. PubMed ID: 16776838
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MeDor: a metaserver for predicting protein disorder.
    Lieutaud P; Canard B; Longhi S
    BMC Genomics; 2008 Sep; 9 Suppl 2(Suppl 2):S25. PubMed ID: 18831791
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein classification using probabilistic chain graphs and the Gene Ontology structure.
    Carroll S; Pavlovic V
    Bioinformatics; 2006 Aug; 22(15):1871-8. PubMed ID: 16705013
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of enzyme classes from 3D structure: a general model and examples of experimental-theoretic scoring of peptide mass fingerprints of Leishmania proteins.
    Concu R; Dea-Ayuela MA; Perez-Montoto LG; Bolas-Fernández F; Prado-Prado FJ; Podda G; Uriarte E; Ubeira FM; González-Díaz H
    J Proteome Res; 2009 Sep; 8(9):4372-82. PubMed ID: 19603824
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Predicting protein function from domain content.
    Forslund K; Sonnhammer EL
    Bioinformatics; 2008 Aug; 24(15):1681-7. PubMed ID: 18591194
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.