241 related articles for article (PubMed ID: 18639657)
1. Protein identification pipeline for the homology-driven proteomics.
Junqueira M; Spirin V; Balbuena TS; Thomas H; Adzhubei I; Sunyaev S; Shevchenko A
J Proteomics; 2008 Aug; 71(3):346-56. PubMed ID: 18639657
[TBL] [Abstract][Full Text] [Related]
2. Tools for exploring the proteomosphere.
Shevchenko A; Valcu CM; Junqueira M
J Proteomics; 2009 Mar; 72(2):137-44. PubMed ID: 19167528
[TBL] [Abstract][Full Text] [Related]
3. Protein identification using 2D-LC-MS/MS.
Delahunty C; Yates JR
Methods; 2005 Mar; 35(3):248-55. PubMed ID: 15722221
[TBL] [Abstract][Full Text] [Related]
4. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
5. The Multi-Q web server for multiplexed protein quantitation.
Yu CY; Tsui YH; Yian YH; Sung TY; Hsu WL
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W707-12. PubMed ID: 17553828
[TBL] [Abstract][Full Text] [Related]
6. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
[TBL] [Abstract][Full Text] [Related]
7. DBParser: web-based software for shotgun proteomic data analyses.
Yang X; Dondeti V; Dezube R; Maynard DM; Geer LY; Epstein J; Chen X; Markey SP; Kowalak JA
J Proteome Res; 2004; 3(5):1002-8. PubMed ID: 15473689
[TBL] [Abstract][Full Text] [Related]
8. Tangible benefits of the aphid Acyrthosiphon pisum genome sequencing for aphid proteomics: Enhancements in protein identification and data validation for homology-based proteomics.
Cilia M; Tamborindeguy C; Rolland M; Howe K; Thannhauser TW; Gray S
J Insect Physiol; 2011 Jan; 57(1):179-90. PubMed ID: 21070785
[TBL] [Abstract][Full Text] [Related]
9. MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.
Ballardini R; Benevento M; Arrigoni G; Pattini L; Roda A
J Chromatogr A; 2011 Dec; 1218(49):8859-68. PubMed ID: 21783198
[TBL] [Abstract][Full Text] [Related]
10. Design and analysis of quantitative differential proteomics investigations using LC-MS technology.
Bukhman YV; Dharsee M; Ewing R; Chu P; Topaloglou T; Le Bihan T; Goh T; Duewel H; Stewart II; Wisniewski JR; Ng NF
J Bioinform Comput Biol; 2008 Feb; 6(1):107-23. PubMed ID: 18324749
[TBL] [Abstract][Full Text] [Related]
11. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.
Wong JW; Sullivan MJ; Cagney G
Brief Bioinform; 2008 Mar; 9(2):156-65. PubMed ID: 17905794
[TBL] [Abstract][Full Text] [Related]
12. Increasing the mass accuracy of high-resolution LC-MS data using background ions: a case study on the LTQ-Orbitrap.
Scheltema RA; Kamleh A; Wildridge D; Ebikeme C; Watson DG; Barrett MP; Jansen RC; Breitling R
Proteomics; 2008 Nov; 8(22):4647-56. PubMed ID: 18937253
[TBL] [Abstract][Full Text] [Related]
13. Mass spectrometry-based protein identification in proteomics-a review.
Noor Z; Ahn SB; Baker MS; Ranganathan S; Mohamedali A
Brief Bioinform; 2021 Mar; 22(2):1620-1638. PubMed ID: 32047889
[TBL] [Abstract][Full Text] [Related]
14. An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics.
Valledor L; Weckwerth W
Methods Mol Biol; 2014; 1072():347-58. PubMed ID: 24136534
[TBL] [Abstract][Full Text] [Related]
15. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
Gehlenborg N; Yan W; Lee IY; Yoo H; Nieselt K; Hwang D; Aebersold R; Hood L
Bioinformatics; 2009 Mar; 25(5):682-3. PubMed ID: 19129212
[TBL] [Abstract][Full Text] [Related]
16. Informatics for protein identification by mass spectrometry.
Johnson RS; Davis MT; Taylor JA; Patterson SD
Methods; 2005 Mar; 35(3):223-36. PubMed ID: 15722219
[TBL] [Abstract][Full Text] [Related]
17. Platforms and Pipelines for Proteomics Data Analysis and Management.
Codrea MC; Nahnsen S
Adv Exp Med Biol; 2016; 919():203-215. PubMed ID: 27975218
[TBL] [Abstract][Full Text] [Related]
18. MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
Hartler J; Thallinger GG; Stocker G; Sturn A; Burkard TR; Körner E; Rader R; Schmidt A; Mechtler K; Trajanoski Z
BMC Bioinformatics; 2007 Jun; 8():197. PubMed ID: 17567892
[TBL] [Abstract][Full Text] [Related]
19. Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.
Slebos RJ; Brock JW; Winters NF; Stuart SR; Martinez MA; Li M; Chambers MC; Zimmerman LJ; Ham AJ; Tabb DL; Liebler DC
J Proteome Res; 2008 Dec; 7(12):5286-94. PubMed ID: 18939861
[TBL] [Abstract][Full Text] [Related]
20. Proteomics by mass spectrometry--go big or go home?
Khan MF; Bennett MJ; Jumper CC; Percy AJ; Silva LP; Schriemer DC
J Pharm Biomed Anal; 2011 Jun; 55(4):832-41. PubMed ID: 21382686
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]